View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_49 (Length: 212)
Name: NF1275_low_49
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 99 - 194
Target Start/End: Original strand, 37388933 - 37389028
Alignment:
| Q |
99 |
aggttcacttttgtcgaattcgatcgtatatgtgatggtatagagttgttaatcgttcttgattacggattatggttgaattttagatgattttat |
194 |
Q |
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| T |
37388933 |
aggttcacttttgacgaatttgatcgtatatgtgatggtatagagttgttaatcgttcttgattacggattatggttgaattttagatgattttat |
37389028 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 37388800 - 37388876
Alignment:
| Q |
18 |
atatctgtttgtggttcaaggatgtttcacaattaaggattgtcgcatggctttttctctaatttccagaaattggt |
94 |
Q |
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| T |
37388800 |
atatctgtttgtggttcaaggatgtttcacaattaaggattgtcacatggctttttctctaatttccagaaattggt |
37388876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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