View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_5 (Length: 467)
Name: NF1275_low_5
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 161 - 439
Target Start/End: Original strand, 43416303 - 43416581
Alignment:
| Q |
161 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
260 |
Q |
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| T |
43416303 |
ttataagagaatatgagtcaacaaaaattgatgtattcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgca |
43416402 |
T |
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| Q |
261 |
acacctcctcaagtgctacattcttgaatannnnnnnactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcat |
360 |
Q |
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| T |
43416403 |
acacctcctcaagtgctacattcttgaatatttttttactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataaccattcat |
43416502 |
T |
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| Q |
361 |
gtaaccaaaagaggaaagaaaaataagagggaaaactttcaatgattgacataaaatttttgtattgcatctcagtggt |
439 |
Q |
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| T |
43416503 |
gtaaccaaaagaggaaagaaaaataagagggaaaactttcaatgattgacataaaatttttgtattgcatctcagtggt |
43416581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 43416131 - 43416283
Alignment:
| Q |
13 |
aatatcagtagtgtctttttctacttgtttttgcaacatgttcttcaatagattgctttgattttgcttatccatccagttatcgactatgaaacatcaa |
112 |
Q |
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| T |
43416131 |
aatatcagtagtgtctttttctacttgtttttgcaacatgttcttcaatagattgctttgattttgcttatccatccagttatcgactatgaaacatcaa |
43416230 |
T |
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| Q |
113 |
caccggacacagacacgcatataacgctttcaatctgaaatgttagtgttata |
165 |
Q |
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| T |
43416231 |
caccggacacagacacgcatataacgctttcaatctgaaatgttagtgctata |
43416283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 298 - 432
Target Start/End: Original strand, 43401755 - 43401891
Alignment:
| Q |
298 |
actctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcatgtaaccaaaagagg--aaagaaaaataagagggaaaa |
395 |
Q |
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| T |
43401755 |
actctataaactatagtaagatatggtgcacatagaataacaaagaggggaataatcaatcatgtaaccaaaagagggaaaaaaaatataagagggaaaa |
43401854 |
T |
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| Q |
396 |
ctttcaatgattgacataaaatttttgtattgcatct |
432 |
Q |
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| T |
43401855 |
ttttcaatgattgacataagaattttgcactgcatct |
43401891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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