View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_6 (Length: 467)
Name: NF1275_low_6
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 64 - 375
Target Start/End: Complemental strand, 40577723 - 40577412
Alignment:
| Q |
64 |
cataggccactcgcgttaacatctgacctgggggtattgaactctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgtt |
163 |
Q |
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| T |
40577723 |
cataggccactcgcgttaacatctgacctgggggtattgaactctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgtt |
40577624 |
T |
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| Q |
164 |
gcagaaagccacacatcctgtggcgtaggttttttcctcagaatcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttg |
263 |
Q |
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| T |
40577623 |
gcagaaagccacacatcctgtggcgtaggttttttcctcagaatcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttg |
40577524 |
T |
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| Q |
264 |
ttttgagttgagatgtgaaaatgtgtcacgttgatttcctgaaatgtttggttcacttgtgtgccattttttgaatagcaatagctggctactggccatg |
363 |
Q |
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| T |
40577523 |
ttttgagttgagatgtgaaaatgtgtcacgttgatttcctgaaatgtttggtttacttgtgtgccattttttgaatagcaatagctggctactggccatg |
40577424 |
T |
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| Q |
364 |
caacgtgaagtt |
375 |
Q |
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| T |
40577423 |
caacgtgaagtt |
40577412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 71 - 365
Target Start/End: Complemental strand, 40571290 - 40570999
Alignment:
| Q |
71 |
cactcgcgttaacatctgacctgggggta-ttgaactctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgttgcagaa |
169 |
Q |
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| T |
40571290 |
cactcgcgttaacatgtgaacttggggtaattgaa-tctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagta |
40571192 |
T |
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| Q |
170 |
agccacacatcctgtggcgtaggttttttcctcagaatcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttgttttga |
269 |
Q |
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| T |
40571191 |
agcaacacatcctgtggcgtaggtttttcgcccagaatcagctgcttctaatac------tcccaccgtgtcacaaccaactgctatcaacttgttttta |
40571098 |
T |
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| Q |
270 |
gttg---agatgtgaaaatgtgtcacgttgatttcctgaaatgtttggttcacttgtgtgccattttttgaatagcaatagctggctactggccatgca |
365 |
Q |
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| T |
40571097 |
gttggcgagatgtgaaaatgtgtcatgttgatatcctgaattatttggctcaattttgtaccattttctgaatagcaatcacttgctactggccatgca |
40570999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 370
Target Start/End: Complemental strand, 40566586 - 40566307
Alignment:
| Q |
88 |
gacctgggggtattgaactctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgttgcagaaagccacacatcctgtggc |
187 |
Q |
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| T |
40566586 |
gaccttggggtattgaaatctcgcaacaaccagtacctgagcaagattgactggccataatatcatcaagcctgttgcataaagccacacatcctgtggt |
40566487 |
T |
|
| Q |
188 |
gtaggttttttcctcagaatcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttgttttgagtt---gagatgtgaaaa |
284 |
Q |
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| T |
40566486 |
gtagttgtttcccccagaatca--atcgccga----gagtgctccaatcgtgtcacagccaactgctgtcaacttgtttcgagttggcgagatgtaaaaa |
40566393 |
T |
|
| Q |
285 |
tgtgtcacgttgatttcctgaaatgtttggttcacttgtgtgccattttttgaatagcaatagctggctactggccatgcaacgtg |
370 |
Q |
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| T |
40566392 |
tgtgtcatgttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatcgctggctactggccatgcaacgtg |
40566307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 375
Target Start/End: Complemental strand, 40589416 - 40589278
Alignment:
| Q |
240 |
tcacaaccaactgctataaacttgttttgagttg---agatgtgaaaatgtgtcacgttgatttcctgaaatgtttggttcacttgtgtgccattttttg |
336 |
Q |
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||||| |||||||||| ||||||||| |||| | ||| |||||||||||||| |||||| ||||| |||||| | | | || ||| |||||||| |
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| T |
40589416 |
tcacagccaactgctaccaacttgtttcgagtgggagagaggtgaaaatgtgtcatgttgataaactgaattgtttgttccgttcgtatgctattttttg |
40589317 |
T |
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| Q |
337 |
aatagcaatagctggctactggccatgcaacgtgaagtt |
375 |
Q |
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| T |
40589316 |
aatagcaatccttggctactggccatgcaacgtgtagtt |
40589278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 40595837 - 40595787
Alignment:
| Q |
223 |
cgagtattcccaccgtgtcacaaccaactgctataaacttgttttgagttg |
273 |
Q |
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| T |
40595837 |
cgagtagtcccattgtgtcacatccaactgctatcaacttgttttgagttg |
40595787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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