View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_7 (Length: 464)
Name: NF1275_low_7
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 194 - 337
Target Start/End: Original strand, 37953799 - 37953940
Alignment:
| Q |
194 |
ggtgccatttagaatggacctttacatgtattggtccatgatggacaaatttatgaaaaccatttgattaagtacactttatgatcttatcatatactct |
293 |
Q |
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| T |
37953799 |
ggtgccatttagaatggacctttacatgtattggtccatgatggacaaatttatgaaaaccatttgattaagtacactttatgatcttatcatgta--ct |
37953896 |
T |
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| Q |
294 |
ctctaccatataatatttcctttcttttcttccctctcatctct |
337 |
Q |
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| T |
37953897 |
ctctaccatataatatttcctttcttttgctccctctcatctct |
37953940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 7114570 - 7114418
Alignment:
| Q |
41 |
ttcaacaatattatgctttgagtgcag---tgcctaccaatacaacatcgtactcgttctcattctctatgtttgagtttctatagcaacgtgaaaagaa |
137 |
Q |
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| T |
7114570 |
ttcaacaatattatgctttgagtgccactatgcctaccaatacaacatcgtactcgttctcattctctatgtttgagtttctatagcaacgtgaaaagaa |
7114471 |
T |
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| Q |
138 |
agacaattgnnnnnnnnnttggaattgaggaggatcatttttaaattcagaaa |
190 |
Q |
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| T |
7114470 |
agacacttgaaaaaaaaaatggaattaaggaggatcatttttaaattcagaaa |
7114418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 340 - 436
Target Start/End: Complemental strand, 7114419 - 7114314
Alignment:
| Q |
340 |
aacatatgtttattttagagcaaaaacatatcatttagttatctttcgt----atcgatgttttt-----cataaattttttacatagaagcatggggtt |
430 |
Q |
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| T |
7114419 |
aacatatgtttattttagagcaaaaacatataatttagttacctttcgttttcatcgatgtttttaaagacataaattttttacatagaagcatggggtt |
7114320 |
T |
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| Q |
431 |
caaact |
436 |
Q |
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|||||| |
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| T |
7114319 |
caaact |
7114314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 16407505 - 16407592
Alignment:
| Q |
194 |
ggtgccatttagaatggacctttacatgtattggtccatgatggacaaatttatgaaaaccatttgattaagtacactttatgatctt |
281 |
Q |
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| T |
16407505 |
ggtgacatttagaatggaccattccatatattggtccatgatggacaaatttataagaaccattggaataagaacactttataatctt |
16407592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 16407608 - 16407662
Alignment:
| Q |
267 |
acactttatgatcttatcatatactctctctaccatataatatttcctttctttt |
321 |
Q |
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| T |
16407608 |
acactttatgatcttatgatgtactccctctagcatataatattccctttctttt |
16407662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 37218214 - 37218167
Alignment:
| Q |
1 |
tgtggggtaataaatataacgaagagatgtttatctagcgttcaacaa |
48 |
Q |
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| T |
37218214 |
tgtggggtaataaatataacgaagagatgtttatctagcgttcaacaa |
37218167 |
T |
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