View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1275_low_9 (Length: 453)
Name: NF1275_low_9
Description: NF1275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1275_low_9 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 43 - 453
Target Start/End: Complemental strand, 41890682 - 41890272
Alignment:
| Q |
43 |
attattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaaggctctcttgt |
142 |
Q |
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| T |
41890682 |
attattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaaggctctcttgt |
41890583 |
T |
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| Q |
143 |
cctctctattcttatgtcaaattgtcaatttaagatgaattgattctgaaactaaaaagtcaattattggcttgttaattgtttcagcttcctagcataa |
242 |
Q |
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| T |
41890582 |
cctctctattcttatgtcaaattgtcaatttaaaatgaattgattctgaaactaaaaagtcaattattggcttgttaattgtttcagcttcctagcataa |
41890483 |
T |
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| Q |
243 |
tgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattgggtaatgaatcaagaaaccaaagaaatttaagacttgttttatca |
342 |
Q |
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| T |
41890482 |
tgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattgggtaatgaatcaagaaaccaaagaaatttaagacttgttttctca |
41890383 |
T |
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| Q |
343 |
atgtattgattatcaatttgtgtcttttatttcaggctggaatttacataggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattat |
442 |
Q |
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| T |
41890382 |
atgtattgattatcaatttgtgtcttttatttcaggctggaatttacataggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattat |
41890283 |
T |
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| Q |
443 |
tgctgattcat |
453 |
Q |
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| T |
41890282 |
tgctgattcat |
41890272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 43 - 305
Target Start/End: Complemental strand, 41896294 - 41896022
Alignment:
| Q |
43 |
attattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaaggctctcttgt |
142 |
Q |
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| T |
41896294 |
attattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccacgtcatattttgtaaggcactcttgt |
41896195 |
T |
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| Q |
143 |
cc--------tctctattcttatgtcaaattgtcaa--tttaagatgaattgattctgaaactaaaaagtcaattattggcttgttaattgtttcagctt |
232 |
Q |
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| T |
41896194 |
cctctcaatttctctatgcttatgtcaaattgtcaaatttttaaatgaattaattataaaatcaaaagatgaattattttcttgtgaattatttcagctt |
41896095 |
T |
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| Q |
233 |
cctagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattgggtaatga |
305 |
Q |
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| T |
41896094 |
cctagtataatgtggttgataatcaagaagccaaggagattcagtatcaattggttcatcaattgggtaatga |
41896022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 453
Target Start/End: Complemental strand, 41895917 - 41895829
Alignment:
| Q |
365 |
tcttttatttcaggctggaatttacataggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattattgctgattcat |
453 |
Q |
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| T |
41895917 |
tctttcatttcaggttgcaatttgcataggtgtgtgtattatgttggcatctacaattggtggcttgaggaacattattgttgattcat |
41895829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 22552070 - 22552153
Alignment:
| Q |
219 |
aattgtttcagcttcctagcataatgtggatgataatcaagaaaccaaagaaattcagcatcaactggttcatcaattgggtaa |
302 |
Q |
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| T |
22552070 |
aattgtttcagcttcctagtataatgtggctaataatcaagaaaccaaagagatttagcatcaactggttcataaattgggtaa |
22552153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 22551910 - 22551974
Alignment:
| Q |
68 |
ttctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaag |
132 |
Q |
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| T |
22551910 |
ttctttggcgatcttcttggcttctttggtggatttggttttgctcccacttcatattttgtaag |
22551974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 22552211 - 22552293
Alignment:
| Q |
371 |
atttcaggctggaatttacataggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattattgctgattcat |
453 |
Q |
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| T |
22552211 |
atttcaggctgccatatacattggtgtgtgcattatgctggcatccactattggtggcttcaggaatatcattgctgattcat |
22552293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 43855185 - 43855252
Alignment:
| Q |
65 |
ccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaag |
132 |
Q |
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| T |
43855185 |
ccattctttggtgctctccttggattttttggaggattggcatttgctcccacaacatattttgtaag |
43855252 |
T |
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