View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276-Insertion-2 (Length: 255)
Name: NF1276-Insertion-2
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 32150252 - 32150007
Alignment:
| Q |
8 |
gtgagggcttctactcttgtaactgtgaacttatagtgaattttagtttgtgatagtgaatatgataccccttttataaaagtctgcatattagagagac |
107 |
Q |
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| T |
32150252 |
gtgagggcttctactcttgtaactgtgaacttatagtgaattttagtttgtgatagtgaatatgataccccttttataaaagtgtgcctattagagagac |
32150153 |
T |
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| Q |
108 |
cctacataatttccttcacttatagtgaatttttaacatttatttgatgttcaaagaattcttattttatcctatcgttttaagtataaactgtatgtag |
207 |
Q |
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| T |
32150152 |
cctacataatttccttcacttatagtgaatttttaacatttatttgttgttcaaagaattcttattttatcctatcgttttaagtataaactgtatgtag |
32150053 |
T |
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| Q |
208 |
gcgccttctagggtgagcgaccttgataggtctctcacggtgagag |
253 |
Q |
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| T |
32150052 |
gcgccttttagggtgagcgaccttgataagtctctcacggtgagag |
32150007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 7005268 - 7005223
Alignment:
| Q |
210 |
gccttctagggtgagcgaccttgataggtctctcacggtgagagag |
255 |
Q |
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| T |
7005268 |
gccttctagggtgagcgactttgataggtctctcacggtgagagag |
7005223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 32124837 - 32124761
Alignment:
| Q |
77 |
ccttttataaaagtctgcatatta--gagagaccctacataatttccttcacttatagtgaatttttaacatttatt |
151 |
Q |
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| T |
32124837 |
ccttttttaaaagtgtgcatattatagagagaccctcgataatttccctcacttatattgaatttttagcatttatt |
32124761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 1174773 - 1174726
Alignment:
| Q |
207 |
ggcgccttctagggtgagcgaccttgataggtctctcacggtgagaga |
254 |
Q |
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| T |
1174773 |
ggcgccttctgaggtgagcgaccttgataggtctctcacgatgagaga |
1174726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Complemental strand, 41727983 - 41727948
Alignment:
| Q |
220 |
gtgagcgaccttgataggtctctcacggtgagagag |
255 |
Q |
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| T |
41727983 |
gtgagtgaccttgataggtctctcacggtgagagag |
41727948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 22376647 - 22376605
Alignment:
| Q |
206 |
aggcgccttctagggtgagcgaccttgataggtctctcacggt |
248 |
Q |
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| T |
22376647 |
aggcgccttctagggtgagagaccttaataggtctcccacggt |
22376605 |
T |
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