View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276-Insertion-3 (Length: 677)
Name: NF1276-Insertion-3
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 368
Target Start/End: Complemental strand, 28822098 - 28821752
Alignment:
| Q |
7 |
aaaaaattcataagagatactagaatataatttacaaaggatgtttctacctaggaatgctggcaagatttaatgaataatttacctaatcacaagaaat |
106 |
Q |
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| T |
28822098 |
aaaaaattcataagagata---gaata--atttacaaaggatgtttctacctaggaatgctggcaagatttaatgaataatttacctaatcacaagaaat |
28822004 |
T |
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| Q |
107 |
gattcgctttgggcatgcnnnnnnnnnnnnnnnnnnaccataaacaatgtaaatttttatcctaaaaaatactttatttgattaattgcaggcttagatt |
206 |
Q |
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| T |
28822003 |
gattcgctttgggcatgctttttttt----------accataaacaatgtaaatttttatcctaaaaaatactttatttgattaattgtaggcttagatt |
28821914 |
T |
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| Q |
207 |
tcagacactagtggacatgatctgtgatgctgaaagattgtccatatttcttctgtatttaattatgggcctgcatttgatcacaaattaaatcattgaa |
306 |
Q |
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| T |
28821913 |
tcagacactagtggacatgatctgtgatgctgaaagattgtccatatttcttctgtatttaattatgggcctgcatttgatcacaaattaaatcattgaa |
28821814 |
T |
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| Q |
307 |
ttaattttatatacttcaaaataagtgttttattttataattcattgacaactcatatcatg |
368 |
Q |
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| T |
28821813 |
ttaattttatatacttcaaaataagtgttttattttataattcattgacaactcatatcatg |
28821752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 409 - 677
Target Start/End: Complemental strand, 28821734 - 28821466
Alignment:
| Q |
409 |
ttgaaattgtctataccacccacctctaaatggatcatacttgatgaaattgactaatcttttcctttttcaataataaattgtggaatcattcaattgg |
508 |
Q |
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| T |
28821734 |
ttgaaattgtctataccacccacctctatatggatcatacttgatgaaattgactaatcttttcctttttcaataataaattgtggaatcattcaattgg |
28821635 |
T |
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| Q |
509 |
gtcacctcatcaccccatgcttagacaagaattttttcatttatttggcaatggatatagtgacctgacccctcaaaggaatgatcgatatattttcaat |
608 |
Q |
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| T |
28821634 |
gtcacctcatcaccccatgcttagacaacaattttttcatttatttggcaatggatatagtgacctgacccctcaaatgaatgatcgatatattttctat |
28821535 |
T |
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| Q |
609 |
ttcccatcaatttgccgtgttgaatttgattgcccataaagaatcttgttatgttatagttagatatca |
677 |
Q |
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| T |
28821534 |
ttcccatcaatttgccgtgttgaatttgattgcccataaagaatcttgttatgttatagttagatatca |
28821466 |
T |
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