View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276-Insertion-4 (Length: 428)
Name: NF1276-Insertion-4
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276-Insertion-4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 428
Target Start/End: Original strand, 31240498 - 31240924
Alignment:
| Q |
7 |
aaaagccaccatctggaattagcc------tcatgtctagtggatccttctttttctgctcttttaggtccattttgctaaacttggagttgaactcacc |
100 |
Q |
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| T |
31240498 |
aaaagccaccatctggaattagctcatgatttatgtctagtggatc-ttctttttctgctctttaaggtccattttgctaaacttggaattgaactcacc |
31240596 |
T |
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| Q |
101 |
atgttgacgacgtacttagaggttacttatcaacaactttcttacactagcagaagctgaactcatgccctatagcgtataacctgactccttataccaa |
200 |
Q |
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| T |
31240597 |
atgttgacgaagtacttagaggttacttagcaacaactttcttacactagcagaagctgaactcatgccctatagcgtataacctgactccttataccaa |
31240696 |
T |
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| Q |
201 |
ataggtcaacacccactcgcatcgtaaaccatgtttttcattagaaaattttctcctttcaacagattttataacattaatcctaataaatcggaagcca |
300 |
Q |
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| T |
31240697 |
ataggtcaacacccactcgcatcgtaaaccatgtttttcattagaaaattttctcctttcaacagattttataacattaatcctaataagtcggaagcta |
31240796 |
T |
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| Q |
301 |
gacattttgcattgacagttaaggcattctctttaataaaccagcaactacttcattcaataacattaggagaatctgcatgaatacctcgacataacta |
400 |
Q |
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| T |
31240797 |
gacattttgcattgacagttaaggcattctctttaataaaccagcaactacttcgttcaataacattaggagaatctgcatgaatacctcgacataacta |
31240896 |
T |
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| Q |
401 |
ttgaatccataaagaaatacatgtgaag |
428 |
Q |
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| T |
31240897 |
ttgaatccataaagatatacatgtgaag |
31240924 |
T |
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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 349 - 428
Target Start/End: Original strand, 7205818 - 7205897
Alignment:
| Q |
349 |
tacttcattcaataacattaggagaatctgcatgaatacctcgacataactattgaatccataaagaaatacatgtgaag |
428 |
Q |
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| T |
7205818 |
tacttcattcaataacattaagagaatctacttgaatacctcgacataactatagaatccataaacaaatacatgtgaag |
7205897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 7913032 - 7912983
Alignment:
| Q |
33 |
atgtctagtggatccttctttttctgctcttttaggtccattttgctaaa |
82 |
Q |
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| T |
7913032 |
atgtctagttgatccttctttttctgctcttttaggctcattttgctaaa |
7912983 |
T |
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