View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1276-Insertion-5 (Length: 730)
Name: NF1276-Insertion-5
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 2714410 - 2714759
Alignment:
| Q |
8 |
ttaacataattgttgtgattatgttataaaaatggttgtgattgacatgacaacccatgccgatccaaatggtgttgtgatcgttaaaaataatagctcg |
107 |
Q |
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| T |
2714410 |
ttaacataattgttgtgattatgttataaaaatggttgtgattgacatgacaacccatgccgatccaaatggtgttgtgatcgttaaaaataatagctcg |
2714509 |
T |
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| Q |
108 |
aaacaaaaagactttgtaaaagtaatgaagacttatattttatagaatttctctgaacctcaacattttaaaaattttgtcttgaaccggccatgactga |
207 |
Q |
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| T |
2714510 |
aaacaaaaagactttgtaaaagtaataaagacttata-tttatagaatttctctgaacctcaacattttaaaatttttgtcttgaaccggccatgactga |
2714608 |
T |
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| Q |
208 |
ttgattcaagtgggagtatgattgtttagtgactttcttgcaaacttggcaca-tgatagaaagaagaaaaaatgggaaatatccaaataaagatattga |
306 |
Q |
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| T |
2714609 |
ttgattcaagtgggagtatgattgtttagtgactttcttgcaaacttggcacattgatagaaagaagaaaaaatgggaaatatccaaataaagatattga |
2714708 |
T |
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| Q |
307 |
aattgaattagggacaaacatatttagttatgtttgatattatggtggatg |
357 |
Q |
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| T |
2714709 |
aattgaattagggacaaatatatttagttatgtttgatatcatggtggatg |
2714759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 365 - 730
Target Start/End: Original strand, 2714788 - 2715153
Alignment:
| Q |
365 |
tactcttaaatatttattttttaatatgacaaaacttccatacaaccgattctcttaacgtatcatacgacatagattctctacctatatggtggaaaat |
464 |
Q |
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| T |
2714788 |
tactcttaaatatttatttttcaatatgacaaaacttccatacaatcgattttcttaatagatcatacgacatagattctctacctatgtggtggaaaat |
2714887 |
T |
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| Q |
465 |
acacccaaccattttatctatcattctcatatgagtataatacactatatctttatttttctggatcactttctcacttttctctcatnnnnnnngtctg |
564 |
Q |
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| T |
2714888 |
acacccaaccattttatctatcattctcatatgagtataactcactatatctttatttttctggatcactttctcacttttctctcatgaaaaaagtctg |
2714987 |
T |
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| Q |
565 |
aagtcaacaaaatgcatgagattcaaagtcactacaaaattcattttcaccatattacattatgtttctatgaaccattccatgatatctagctacttgt |
664 |
Q |
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| T |
2714988 |
aagtcaacaaaatgcatgagattcaaagtcactataaaattcattttcaccatattacattatgtttctatgaaccattccatgatatctagctacttgt |
2715087 |
T |
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| Q |
665 |
gttgatgtccttctctaccttccttgtttttgttccgcatgtcttctacaacatgacttgatgcca |
730 |
Q |
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| T |
2715088 |
gttgatgtccttctctaccttccttgtttttgttccgcatgtcttctacaacatgacttgatgcca |
2715153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 19397288 - 19397254
Alignment:
| Q |
108 |
aaacaaaaagactttgtaaaagtaatgaagactta |
142 |
Q |
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| T |
19397288 |
aaacaaaaagactttgtaaaagaaatgaagactta |
19397254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 18019243 - 18019127
Alignment:
| Q |
178 |
aaaattttgtcttgaaccggccatgactgattgattcaagtgggagtatgattgtttagtgactt-tcttgcaaacttggcacatgatagaaagaagaaa |
276 |
Q |
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|||||||||||||||| | |||| | |||||||||||||||| || ||||| |||||||||| |||| |||| ||||| |||| |||| || ||| |
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| T |
18019243 |
aaaattttgtcttgaagtgaccataattgattgattcaagtggcag-ctgatttcttagtgacttctcttacaaatttggcgtatgaaagaagcaataaa |
18019145 |
T |
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| Q |
277 |
aaatgggaaatatccaaa |
294 |
Q |
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|||| ||||||||||||| |
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| T |
18019144 |
aaataggaaatatccaaa |
18019127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 19417521 - 19417404
Alignment:
| Q |
178 |
aaaattttgtcttgaaccggccatgactgattgattcaagtgggagtatgattgtttagtgactt-tcttgcaaacttggcacatgatagaaagaagaaa |
276 |
Q |
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||||||||||| |||| | |||| | ||||||||||||||| ||| ||||| |||||||||| ||||| ||| ||||| |||| |||| | |||| |
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| T |
19417521 |
aaaattttgtcctgaagtgaccataattgattgattcaagtgacagtgtgatttcttagtgacttctcttgtaaatttggcgtatgaaagaagcatgaaa |
19417422 |
T |
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| Q |
277 |
aaatgggaaatatccaaa |
294 |
Q |
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|||| ||||||||||||| |
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| T |
19417421 |
aaataggaaatatccaaa |
19417404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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