View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1276-Insertion-7 (Length: 643)
Name: NF1276-Insertion-7
Description: NF1276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1276-Insertion-7 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 636; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 8 - 643
Target Start/End: Original strand, 42074971 - 42075606
Alignment:
| Q |
8 |
catagtacagttggtaggaactttggttgcttcaagtgtatacttcggcacagcatggtggcttctaacgactattccacacatatgcgataaatcaatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42074971 |
catagtacagttggtaggaactttggttgcttcaagtgtatacttcggcacagcatggtggcttctaacgactattccacacatatgcgataaatcaatg |
42075070 |
T |
|
| Q |
108 |
ttgccagatggtagtccatggacttgtcctggtgacgaggttttttacaatgcttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaagg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42075071 |
ttgccagatggtagtccatggacttgtcctggtgacgaggttttttacaatgcttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaagg |
42075170 |
T |
|
| Q |
208 |
atggaatataccctggattgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacccaaaccgaaagtggat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42075171 |
atggaatataccctggattgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacccaaaccgaaagtggat |
42075270 |
T |
|
| Q |
308 |
tgaactcgtcaacatgccaattatcattgcaggggccaaaggtataccaccagctagatcaatcagttacatttcatggggagttgttggaatcttcttc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42075271 |
tgaactcgtcaacatgccaattatcattgcaggggccaaaggtataccaccagctagatcaatcagttacatttcatggggagttgttggaatcttcttc |
42075370 |
T |
|
| Q |
408 |
aatatctatgtttacaaaaaattcaaggtatggtgggctagacacacttacattctctcagctgctttggatgctggtgttgctttcatggctgtgttgc |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42075371 |
aatatctatgtttacaaaaaattcaaggtatggtgggctagacacacttacattctctcagctgctttggatgctggtgttgctttcatggctgtgttgc |
42075470 |
T |
|
| Q |
508 |
tctattttctacttcaatcttatggtatctttggtccagcttggtggggtcttaagtcagatgatcattgtcccttggctaattgccctacagctcctgg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42075471 |
tctattttctacttcaatcttatggtatctttggtccagcttggtggggtcttaagtcagatgatcattgtcccttggctaattgccctacagctcctgg |
42075570 |
T |
|
| Q |
608 |
tattaaagccaagggatgccctgtcttttaaattcc |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42075571 |
tattaaagccaagggatgccctgtcttttaaattcc |
42075606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 8 - 639
Target Start/End: Original strand, 42083551 - 42084182
Alignment:
| Q |
8 |
catagtacagttggtaggaactttggttgcttcaagtgtatacttcggcacagcatggtggcttctaacgactattccacacatatgcgataaatcaatg |
107 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42083551 |
catagtgcaattggtaggaactttggtttcttcaagtgtatgcttcagcacagcatggtggcttctaacaactattccacacatatgcgataaatcaatg |
42083650 |
T |
|
| Q |
108 |
ttgccagatggtagtccatggacttgtcctggtgacgaggttttttacaatgcttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaagg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083651 |
ttgccagatggtagtccatggacttgtcctggtgatgaggttttttacaatgcttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaagg |
42083750 |
T |
|
| Q |
208 |
atggaatataccctggattgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacccaaaccgaaagtggat |
307 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
42083751 |
atggaatataccctggaatgaattggtttttcctcatcggtctacttgcgcctgttccggtgtggtttctagctcgcaaatacccgaaccacaagtggat |
42083850 |
T |
|
| Q |
308 |
tgaactcgtcaacatgccaattatcattgcaggggccaaaggtataccaccagctagatcaatcagttacatttcatggggagttgttggaatcttcttc |
407 |
Q |
| |
|
||||||| ||||||||||| |||| |||| ||| || | ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
42083851 |
tgaactcatcaacatgccacttataattggaggtgctagtggtataccaccagctaggtcaatcaattatatttcatggggagttgttggaatcttcttc |
42083950 |
T |
|
| Q |
408 |
aatatctatgtttacaaaaaattcaaggtatggtgggctagacacacttacattctctcagctgctttggatgctggtgttgctttcatggctgtgttgc |
507 |
Q |
| |
|
||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42083951 |
aatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttggatgctggtgttgctttcatggctgtgttgc |
42084050 |
T |
|
| Q |
508 |
tctattttctacttcaatcttatggtatctttggtccagcttggtggggtcttaagtcagatgatcattgtcccttggctaattgccctacagctcctgg |
607 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
42084051 |
tctattttgcacttcaatcttatgatatcattggtccagcttggtggggtcttaagtcagatgatcagtgtcccttggttaattgccctacagctcctgg |
42084150 |
T |
|
| Q |
608 |
tattaaagccaagggatgccctgtcttttaaa |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42084151 |
tattaaagccaagggatgccctgtcttttaaa |
42084182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 8 - 636
Target Start/End: Original strand, 42059674 - 42060302
Alignment:
| Q |
8 |
catagtacagttggtaggaactttggttgcttcaagtgtatacttcggcacagcatggtggcttctaacgactattccacacatatgcgataaatcaatg |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||| ||||||| |
|
|
| T |
42059674 |
catagtacaattggtaggaactttggttgcttcaagtgtatacttcagcacagcatggtggcttctaacaactattccaaacatatgtgatgcatcaatg |
42059773 |
T |
|
| Q |
108 |
ttgccagatggtagtccatggacttgtcctggtgacgaggttttttacaatgcttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaagg |
207 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
42059774 |
ttgcctgagggtagtccatggacttgtcctggtgatgatgtgttttacaatgcttcaatcatatggggagtagtaggaccacaaaggatgtttaccaagg |
42059873 |
T |
|
| Q |
208 |
atggaatataccctggattgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacccaaaccgaaagtggat |
307 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
42059874 |
atggaatttaccctggaatgaattggtttttcctcatcggtctacttgcgcctgttccagtgtggcttctagctcgcaaatacccgaaccacaagtggat |
42059973 |
T |
|
| Q |
308 |
tgaactcgtcaacatgccaattatcattgcaggggccaaaggtataccaccagctagatcaatcagttacatttcatggggagttgttggaatcttcttc |
407 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
42059974 |
tgaactcatcaacatgccacttatcattggaggtgccagtggtataccaccagctagatcaatcaattatatttcatggggagtagttggaatcttcttc |
42060073 |
T |
|
| Q |
408 |
aatatctatgtttacaaaaaattcaaggtatggtgggctagacacacttacattctctcagctgctttggatgctggtgttgctttcatggctgtgttgc |
507 |
Q |
| |
|
||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42060074 |
aatttctatgtttacaaaaatttcaaggcatggtgggctagacacacttacattctctcagctgctttggatgctggtattgctttcatggctgtgttgc |
42060173 |
T |
|
| Q |
508 |
tctattttctacttcaatcttatggtatctttggtccagcttggtggggtcttaagtcagatgatcattgtcccttggctaattgccctacagctcctgg |
607 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42060174 |
tctatttttcacttcaatcttatgatgtctttggtccaacttggtggggtcttgaggcagatgatcattgtcccttggctaaatgccctacagctcctgg |
42060273 |
T |
|
| Q |
608 |
tattaaagccaagggatgccctgtctttt |
636 |
Q |
| |
|
|||| |||||||||| || ||||||| |
|
|
| T |
42060274 |
tattgttaccaagggatgtcccgtctttt |
42060302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 60 - 560
Target Start/End: Complemental strand, 36530495 - 36529995
Alignment:
| Q |
60 |
gcatggtggcttctaacgactattccacacatatgcgataaatcaatgttgccagatggtagtccatggacttgtcctggtgacgaggttttttacaatg |
159 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||| ||||| | |||||| | |||||||| ||||| ||||||||||| || || |||||||||| |
|
|
| T |
36530495 |
gcatggtggcttctaacatctattgagaacatatgtgatgaatcattattgccaaaaggtagtccttggacatgtcctggtgatgatgtattttacaatg |
36530396 |
T |
|
| Q |
160 |
cttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaaggatggaatataccctggattgaattggtttttcctcatcggtctacttgcgcc |
259 |
Q |
| |
|
|||||||||| |||||| | ||||| ||||| || ||||| ||||| || || | || || | |||||||||||||||||| ||||||||| | || || |
|
|
| T |
36530395 |
cttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggtgtttatcccgaattgaattggtttttccttatcggtctaatcgcacc |
36530296 |
T |
|
| Q |
260 |
tgttccagtgtggcttctagctcgcaaatacccaaaccgaaagtggattgaactcgtcaacatgccaattatcattgcaggggccaaaggtataccacca |
359 |
Q |
| |
|
||||| ||||||||||| ||| ||||| || |||| |||||||||| || || ||||||| || |||||||||||||| || | || ||||| |
|
|
| T |
36530295 |
agttcccgtgtggcttctttctctcaaatttcccaaccaaaagtggattcaattcatcaacattcctattatcattgcaggtgcatctgacatcccacct |
36530196 |
T |
|
| Q |
360 |
gctagatcaatcagttacatttcatggggagttgttggaatcttcttcaatatctatgtttacaaaaaattcaaggtatggtgggctagacacacttaca |
459 |
Q |
| |
|
| ||||| | | ||| ||| | ||||| |||||||||| || |||||| |||||||||| | ||| ||||| | ||||||||||||||| ||||||| |
|
|
| T |
36530195 |
gtgagatctgtgaattatattacttgggggattgttggaatatttttcaatttctatgtttatagaaagttcaaagcatggtgggctagacatacttaca |
36530096 |
T |
|
| Q |
460 |
ttctctcagctgctttggatgctggtgttgctttcatggctgtgttgctctattttctacttcaatcttatggtatctttggtccagcttggtggggtct |
559 |
Q |
| |
|
| || ||||||| ||| |||||||| ||||| || || | | | | || |||||| ||||||||||| ||||| | ||||||| ||||||||||||| |
|
|
| T |
36530095 |
tcctttcagctggtttagatgctggagttgcctttataggtttactactttatttttctcttcaatcttacggtatttatggtccaacttggtggggtct |
36529996 |
T |
|
| Q |
560 |
t |
560 |
Q |
| |
|
| |
|
|
| T |
36529995 |
t |
36529995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 57 - 560
Target Start/End: Complemental strand, 36523665 - 36523162
Alignment:
| Q |
57 |
acagcatggtggcttctaacgactattccacacatatgcgataaatcaatgttgccagatggtagtccatggacttgtcctggtgacgaggttttttaca |
156 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| ||| ||||| | |||||| | || ||||| ||||| ||||||||||| || || ||||||| |
|
|
| T |
36523665 |
acagcatggtggcttctaacttctatcgagaacatatgtgatgaatcattattgccaaaaggaagtccttggacatgtcctggtgatgatgtattttaca |
36523566 |
T |
|
| Q |
157 |
atgcttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaaggatggaatataccctggattgaattggtttttcctcatcggtctacttgc |
256 |
Q |
| |
|
||||||||||||| |||||| | ||||| ||||| || ||||| ||||| || || | || |||| |||||||||||||||| || ||||||||||| |
|
|
| T |
36523565 |
atgcttcaatcatctggggagttgtagggccaaagagaatgtttaccaaagacggcgtttatcctgagatgaattggtttttccttattggtctacttgc |
36523466 |
T |
|
| Q |
257 |
gcctgttccagtgtggcttctagctcgcaaatacccaaaccgaaagtggattgaactcgtcaacatgccaattatcattgcaggggccaaaggtatacca |
356 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| | |||| |||||||||| ||||| | ||||| || |||||| ||||| || || || ||| |
|
|
| T |
36523465 |
acctgttccagtgtggcttctttctctcaaatttcgtaaccaaaagtggattcaactcattaacattcctattatcgccgcaggtgcatctggcattcca |
36523366 |
T |
|
| Q |
357 |
ccagctagatcaatcagttacatttcatggggagttgttggaatcttcttcaatatctatgtttacaaaaaattcaaggtatggtgggctagacacactt |
456 |
Q |
| |
|
|||| ||||| | | ||||||| | |||||| |||||||||| | |||||| |||||||||| | ||| ||||||| ||||||||||||||| |||| |
|
|
| T |
36523365 |
ccagtgagatctgtgaattacattacttggggaattgttggaatggttttcaatttctatgtttatagaaagttcaaggcatggtgggctagacatactt |
36523266 |
T |
|
| Q |
457 |
acattctctcagctgctttggatgctggtgttgctttcatggctgtgttgctctattttctacttcaatcttatggtatctttggtccagcttggtgggg |
556 |
Q |
| |
|
| || || || |||| ||| |||||||| ||||| || || | | | | || |||||| ||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
36523265 |
atatcctttctgctggtttagatgctggagttgcctttataggtttactactttatttttctcttcaatcttatggtatttatggtccaacttggtgggg |
36523166 |
T |
|
| Q |
557 |
tctt |
560 |
Q |
| |
|
|||| |
|
|
| T |
36523165 |
tctt |
36523162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 57 - 556
Target Start/End: Complemental strand, 36536110 - 36535611
Alignment:
| Q |
57 |
acagcatggtggcttctaacgactattccacacatatgcgataaatcaatgttgccagatggtagtccatggacttgtcctggtgacgaggttttttaca |
156 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| ||| |||| ||||||| | |||||||| ||||| ||||||||||| || | ||||||| |
|
|
| T |
36536110 |
acagcatggtggcttctaacatctatagagaacatatgtgatgaatcgttgttgccgaaaggtagtccttggacgtgtcctggtgatgatgcattttaca |
36536011 |
T |
|
| Q |
157 |
atgcttcaatcatatggggaatagtaggaccaaaaaggatgttcaccaaggatggaatataccctggattgaattggtttttcctcatcggtctacttgc |
256 |
Q |
| |
|
||||||| || ||||||||| | ||||| ||||| || ||||| ||||| || || | || ||||| |||||||||||||||| || || ||| |||| |
|
|
| T |
36536010 |
atgcttccattatatggggagttgtagggccaaagagaatgtttaccaatgacggcgtttatcctgggatgaattggtttttccttattggcctaattgc |
36535911 |
T |
|
| Q |
257 |
gcctgttccagtgtggcttctagctcgcaaatacccaaaccgaaagtggattgaactcgtcaacatgccaattatcattgcaggggccaaaggtatacca |
356 |
Q |
| |
|
||||| || ||||||||||| || ||||| || |||| ||||||||| |||| ||||||| || |||||||||| ||| || ||| || |
|
|
| T |
36535910 |
acctgtaccggtgtggcttctttctatcaaatttcctaaccacaagtggattaaacttatcaacattcctattatcattgtaggtgcatctactattcct |
36535811 |
T |
|
| Q |
357 |
ccagctagatcaatcagttacatttcatggggagttgttggaatcttcttcaatatctatgtttacaaaaaattcaaggtatggtgggctagacacactt |
456 |
Q |
| |
|
|| ||||| | | ||| ||| | |||||| |||||||||| || |||||| |||||||||| | ||| |||| || |||||||||||||| |||| |
|
|
| T |
36535810 |
cccaggagatctgtgaattatattacttggggaattgttggaatgtttttcaatttctatgtttatagaaagttcagagtttggtgggctagacatactt |
36535711 |
T |
|
| Q |
457 |
acattctctcagctgctttggatgctggtgttgctttcatggctgtgttgctctattttctacttcaatcttatggtatctttggtccagcttggtgggg |
556 |
Q |
| |
|
| ||||||||||||| ||| |||||||| |||||||| |||| | | | || |||||| |||||||| |||||||| ||||||||| | |||||||| |
|
|
| T |
36535710 |
atattctctcagctggtttagatgctggagttgcttttatgggtttagtactttatttttctcttcaatcctatggtatttttggtccaacatggtgggg |
36535611 |
T |
|
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