View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12760_high_5 (Length: 348)
Name: NF12760_high_5
Description: NF12760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12760_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 169 - 324
Target Start/End: Complemental strand, 49222045 - 49221888
Alignment:
| Q |
169 |
caatttgtcgcgtttgaacacttgggtttaggttgtagaataggtagttgtgttgagatacggtcttgtgctggcatgttggnnnnnnnaacatctcaaa |
268 |
Q |
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| T |
49222045 |
caatttgtcgtgtttgaacacttgagtttaggttgtagaataggtagttgtgttgagatacggtcttgtgctggcatgttggtttttttaacatctcaaa |
49221946 |
T |
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| Q |
269 |
aaccatttttgttgaatttaaattttttgattc--gtagtgttttcttgtttctctcc |
324 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49221945 |
aaccatttttgttgaatttaaattttttgattcctgtagtgttttcttgtttctctcc |
49221888 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 40739527 - 40739494
Alignment:
| Q |
17 |
atcaacaacaacaacaattgaatccatgaatcaa |
50 |
Q |
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| T |
40739527 |
atcaacaacaacaacaattgaatccatgaatcaa |
40739494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 6241803 - 6241836
Alignment:
| Q |
17 |
atcaacaacaacaacaattgaatccatgaatcaa |
50 |
Q |
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| T |
6241803 |
atcaacaacaacaacaattgaatccatgaatcaa |
6241836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 3604083 - 3604119
Alignment:
| Q |
14 |
atcatcaacaacaacaacaattgaatccatgaatcaa |
50 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
3604083 |
atcaacaacaacaacaacaattgaatccatgaatcaa |
3604119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 29466741 - 29466708
Alignment:
| Q |
17 |
atcaacaacaacaacaattgaatccatgaatcaa |
50 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
29466741 |
atcaacaacaacaacaattgaatctatgaatcaa |
29466708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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