View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12760_high_7 (Length: 288)
Name: NF12760_high_7
Description: NF12760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12760_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 5396822 - 5396566
Alignment:
| Q |
13 |
tggccaaagcttgtgtaaggaaaactcaacaaaaacacatcaaannnnnnnatgattaaccaagtaactaactaactattgaagtgcaagagttttctcc |
112 |
Q |
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| T |
5396822 |
tggccaaagcttgtgtaaggaaaactcaacaaaaacacatcaaatttttttctgattaactaagtaactaaata----ttgaagtgcaagagttttcttc |
5396727 |
T |
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| Q |
113 |
tctcatgaaataggttcaacattacaaccaaggaagaaagcaacaccaaccaccttccaaattcgagaacaaaaacttatactatgaatgtcttcactcg |
212 |
Q |
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| T |
5396726 |
tctcatgaaataggttcaacattacaaccaaggaagaaagcaacaccaaccaccttccaaattcgagaacaaaaacttatactatgaatgtcttcactcg |
5396627 |
T |
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| Q |
213 |
tttggaaacaaacatatcaaacatctacctatctaactcacaaaaagaaatgcaaatccaa |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396626 |
tttggaaacaaacatatcaaacatctacctatctaactcacaaaaagaaatgcaaatccaa |
5396566 |
T |
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