View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12760_low_1 (Length: 681)
Name: NF12760_low_1
Description: NF12760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12760_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 25 - 667
Target Start/End: Complemental strand, 43604730 - 43604079
Alignment:
| Q |
25 |
cagtttggctataaagaggaataaccagcaaagaaaacnnnnnnnnnnnnctatgctcattgcggtggtttggtgcatatgtcctctgttttcacctgat |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604730 |
cagtttggctataaagaggaataaccagcaaagaaaacaaaaaaaaa---ccatgctcattgcggtggtttggtgcatatgtcctctgttttcacctgat |
43604634 |
T |
|
| Q |
125 |
ctggacattctttgttatatccttgaataggtaaagaattgtgttgagtgactccnnnnnnnnnnnnngcccataaaatagtatacaaacttaaaaccag |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43604633 |
ctggacattctttgttatatccttgaataggtaaagaattgtgttgagtgactccttcttttctttttgcccataaaatagtatacaaacttaaaaccag |
43604534 |
T |
|
| Q |
225 |
cacaatcccacccaaaacactgaaaaacaagtaggtcaaatgtcaataaattagcttatttgactagtttataagtttggtttaacaaaatagaactctt |
324 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43604533 |
cacaatcccacccaaaacactgaaaaacaagcaggtcaaatgtcaataaattagcttatttgactagtttataagtttggtttaacaaaatagaactctt |
43604434 |
T |
|
| Q |
325 |
tgataaatatg--agttttattttattcataatggagttatgattgcaactcacctccctaaacttatctgctcacccaagagtaagacagatccaattg |
422 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||| |
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| T |
43604433 |
tgataaatatgtgagttttattttattcataatggagttatgattgcaactcacctccctaaacgtagtggctcacccaagaggaagacagaaccaattg |
43604334 |
T |
|
| Q |
423 |
tggcaattataaaactcagtggattccaagttgctgagaaaactggtcctctcttctcaatcaccaatgcttgcaggtaatatgaaactccagtcactag |
522 |
Q |
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| T |
43604333 |
tggcaattataaaactcagtggattccaagttgctgagaaaactggtcctctcttctcaatcaccaatgcttgcaggtaatatgaaactccagtcactag |
43604234 |
T |
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| Q |
523 |
taccccctgtttcatttaggaattaggacaatatacacatcaaaaa---------acattcttgccagcatcaatatgcacaataatc-tattgaaaaga |
612 |
Q |
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| T |
43604233 |
taccccctgtttcatttaggaattaggacaatatacacatcaaaaaacatcactaacattcttgccagcatcaaaatgcacaataatcttattgaaaaga |
43604134 |
T |
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| Q |
613 |
gtgtgcataaatataacatgtttagtgtgttactttaatttaatacttacacagt |
667 |
Q |
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| T |
43604133 |
gtgtgcataaatataacatgtttagcgtgttactttaatttaatacttacacagt |
43604079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 360 - 540
Target Start/End: Complemental strand, 43617742 - 43617562
Alignment:
| Q |
360 |
ttatgattgcaactcacctccctaaacttatctgctcacccaagagtaagacagatccaattgtggcaattataaaactcagtggattccaagttgctga |
459 |
Q |
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||||||| | ||||||||||||||||| | |||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43617742 |
ttatgatggtaactcacctccctaaacacagtggctcgcccaagagcaaaacagaaccaattgtggcaattataaaactcagtggattccaagttgctgg |
43617643 |
T |
|
| Q |
460 |
gaaaactggtcctctcttctcaatcaccaatgcttgcaggtaatatgaaactccagtcactagtaccccctgtttcattta |
540 |
Q |
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| T |
43617642 |
gaaaactggtccttttttatcaatcaccaatgcttgcaagtaatatgcaactgcagtcactagtgtcccctgttacattta |
43617562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 372 - 543
Target Start/End: Complemental strand, 43610849 - 43610678
Alignment:
| Q |
372 |
ctcacctccctaaacttatctgctcacccaagagtaagacagatccaattgtggcaattataaaactcagtggattccaagttgctgagaaaactggtcc |
471 |
Q |
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||||||| ||||||| || |||| |||||||| |||||||| || |||||||||||||||||||||| ||| |||||||||||| |||||||||||| |
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| T |
43610849 |
ctcaccttcctaaacatagtggctcgcccaagagcaagacagaaccgattgtggcaattataaaactcattggggtccaagttgctgggaaaactggtcc |
43610750 |
T |
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| Q |
472 |
tctcttctcaatcaccaatgcttgcaggtaatatgaaactccagtcactagtaccccctgtttcatttagga |
543 |
Q |
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| |||||||||||||||||||||||| ||| || | |||| ||||||||||| |||||||| ||||||||| |
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| T |
43610749 |
tttcttctcaatcaccaatgcttgcaagtagtaggcaactgcagtcactagtgtcccctgttacatttagga |
43610678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 43618366 - 43618309
Alignment:
| Q |
193 |
gcccataaaatagtatacaaacttaaaaccagcacaatcccacccaaaacactgaaaa |
250 |
Q |
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||||| |||| ||| |||| |||||||||||||| ||||||||| | ||||||||||| |
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| T |
43618366 |
gcccacaaaacagtgtacagacttaaaaccagcaaaatcccacctataacactgaaaa |
43618309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43604762 - 43604730
Alignment:
| Q |
1 |
acattctaatttttgctgttaacccagtttggc |
33 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
43604762 |
acatactaatttttgctgttaacccagtttggc |
43604730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 43611346 - 43611302
Alignment:
| Q |
208 |
tacaaacttaaaaccagcacaatcccacccaaaacactgaaaaac |
252 |
Q |
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|||| ||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
43611346 |
tacagacttaaaacaagcaaaatcccaccaaaaacactgaaaaac |
43611302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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