View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12760_low_14 (Length: 205)
Name: NF12760_low_14
Description: NF12760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12760_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 24352668 - 24352480
Alignment:
| Q |
10 |
agaagcaaaggtgaatattaatgggtattttcaatagaatggtaattaaagcttagtaaattcgttcaaataaaggatttgtcccccttatacacgtgat |
109 |
Q |
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| T |
24352668 |
agaaacaaaggtgaatattaatgggtatgttcaatagaatggtaattaaagcttagtaaattctttcaagtaaaggatttgtcccccttatataagtgat |
24352569 |
T |
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| Q |
110 |
cagaggttcggttcttgactcatgcgtatg--nnnnnnnnntttgattgaaagaggagaattcacattaatttttgccccacaggttct |
196 |
Q |
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| T |
24352568 |
cagaggttcggttcttgattcatgtgtatgaagaaaaaaaaaatgattgaaagaggagaattcacattaatttatgccccacgggttct |
24352480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 24310326 - 24310150
Alignment:
| Q |
10 |
agaagcaaaggtgaatattaatgggtattttcaatagaatggtaattaaagcttagtaaattcgttcaaataaaggatttgtcccccttatacacgtgat |
109 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| | ||||| |
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| T |
24310326 |
agaaacaaaggtgaatattaatgggtatgttcaatagaatggtaattaaagcttagtaaattctttcaagtaaaggatttgt-ccccttatataagtgat |
24310228 |
T |
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| Q |
110 |
cagaggttcggttcttgactcatgcgtatg-nnnnnnnnntttgattgaaagaggagaattcacattaatttttgccc |
186 |
Q |
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|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
24310227 |
cagaggttcggttcttgattcatgtgtatgaagaaaaaaaaatgattgaaagaggagaattcacattaatttatgccc |
24310150 |
T |
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