View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12760_low_4 (Length: 470)
Name: NF12760_low_4
Description: NF12760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12760_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 48907250 - 48906794
Alignment:
| Q |
18 |
gtaatgactaataatgtttaattataagattattctctttgagatgattttccatttggtagcttagaagtgatgcaatcctaccttcaattgtaaccga |
117 |
Q |
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| T |
48907250 |
gtaatgactaatgatgtttaattataagattattctctttgagatgattttccatttggtagcttagaagtgatgcaatcctatcttcgattgtaaccga |
48907151 |
T |
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| Q |
118 |
accactttgctgtgcagatgagaaaactatattggcttacttggatatatattagtcttccatgctttgtaagtctttgaattttttgagtatatctttt |
217 |
Q |
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| T |
48907150 |
accactttgctgtgcagatgagaaaactatattggcttacttgaatatatattagtgttccatgctttgtaagtctttgaattttttgagtatatctttt |
48907051 |
T |
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| Q |
218 |
aagtactgattgagaaaccaaccagctaatacttgtagggaatggtgatgaaaacccatcacataaacg-ttctactgaaaaaggaattaactactacat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |
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| T |
48907050 |
aagtactgattgagaaaccaaccagctaatacttgtagggaatggtgatgaaaacccatcacataaacgtttctactgaaaatggaagtaactactacat |
48906951 |
T |
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| Q |
317 |
ttgctatttgagcaatttgtgtggattttaaataattcctccggttacgattgcaagcaaaaattcacatttcacatttattgactagatcatgta---t |
413 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
48906950 |
tttctatttgagcaatttgtggggattttaaataattcctccggttacgattgcaagcaaaaattcacatttcacatttattgactagataatgtatctt |
48906851 |
T |
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| Q |
414 |
cttggttgtttaattttaatttaaaggcagaagaagagatgaatacagaccgtgctt |
470 |
Q |
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| T |
48906850 |
cttggttgtttaattttaatttaaaggcagaagaagagatgaatacagaccgtgctt |
48906794 |
T |
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