View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12760_low_6 (Length: 442)

Name: NF12760_low_6
Description: NF12760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12760_low_6
NF12760_low_6
[»] chr6 (3 HSPs)
chr6 (19-194)||(17923819-17923994)
chr6 (330-433)||(8298472-8298575)
chr6 (194-265)||(8298639-8298710)
[»] chr5 (2 HSPs)
chr5 (24-183)||(32359217-32359376)
chr5 (201-241)||(21545111-21545151)
[»] chr2 (6 HSPs)
chr2 (330-433)||(10183554-10183657)
chr2 (331-433)||(10177321-10177423)
chr2 (330-431)||(29749130-29749231)
chr2 (192-265)||(29749296-29749369)
chr2 (194-265)||(10177487-10177558)
chr2 (192-265)||(10183425-10183491)
[»] scaffold0848 (2 HSPs)
scaffold0848 (330-433)||(2581-2684)
scaffold0848 (195-265)||(2446-2516)
[»] chr3 (2 HSPs)
chr3 (330-433)||(3979960-3980063)
chr3 (194-265)||(3980126-3980197)
[»] chr1 (3 HSPs)
chr1 (330-427)||(24791759-24791856)
chr1 (194-265)||(24791622-24791693)
chr1 (194-265)||(24815842-24815913)
[»] chr4 (2 HSPs)
chr4 (337-433)||(47393197-47393293)
chr4 (194-265)||(47393328-47393399)


Alignment Details
Target: chr6 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 17923819 - 17923994
Alignment:
Q  19 gatattggcgatacgaagacgagttttgacttcgatgatttggtagaaagaaacatcgctttgacagattgcttctaggcattttactgcctttgctatt 118  Q
    |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17923819 gatagtggcaatacgaagacgagttttgacttcgatgattgggtagaaagaaacatcgctttgacagattgcttctaggcattttactgcctttgctatt 17923918  T
Q  119 tgacctagcttttcgtgatggtctgctagtccccataacccttctgctagtgcttccattgttgtatatttggtta 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17923919 tgacctagcttttcgtgatggtctgctagtccccataacccttctgctggtgcttccattgttgtatatttggtta 17923994  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 330 - 433
Target Start/End: Complemental strand, 8298575 - 8298472
Alignment:
Q  330 gtgaaatatcagtgcagaagagaaaataacacatttgctgtcatgatcatatattttgtatgaactttgtagattctaattgacatcttgcaactcatct 429  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  8298575 gtgaaatatcagtgcaaaagagaaaataacacatttgctctcatgatcacatattctgtatgaactttctagattctaatcgacatcttgcaactcatct 8298476  T
Q  430 ctgc 433  Q
    ||||    
T  8298475 ctgc 8298472  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 8298710 - 8298639
Alignment:
Q  194 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 265  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  8298710 agagaactgctatatggtgcgacacatagcagcgacgaaacgcacgacgtcacctccctcatgtgcactctc 8298639  T

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Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 32359217 - 32359376
Alignment:
Q  24 tggcgatacgaagacgagttttgacttcgatgatttggtagaaagaaacatcgctttgacagattgcttctaggcattttactgcctttgctatttgacc 123  Q
    |||||||||||||||||||||||||||| | |||| || |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||  ||    
T  32359217 tggcgatacgaagacgagttttgacttcaacgattgggaagaaggaaacttcgctttgacagattgcttctagacattttactgcctttgctatttctcc 32359316  T
Q  124 tagcttttcgtgatggtctgctagtccccataacccttctgctagtgcttccattgttgt 183  Q
    | | ||||||||||||||||||| ||||||||  |||||||||| |||||||||| ||||    
T  32359317 tcggttttcgtgatggtctgctaatccccatagtccttctgctattgcttccattcttgt 32359376  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 21545111 - 21545151
Alignment:
Q  201 tgctatatggtgcgacatatagcagcgacgaaacgcacgac 241  Q
    |||||||||||||||||||||||| | ||||| ||||||||    
T  21545111 tgctatatggtgcgacatatagcacccacgaatcgcacgac 21545151  T

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Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 330 - 433
Target Start/End: Original strand, 10183554 - 10183657
Alignment:
Q  330 gtgaaatatcagtgcagaagagaaaataacacatttgctgtcatgatcatatattttgtatgaactttgtagattctaattgacatcttgcaactcatct 429  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10183554 gtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattttgtatgaactttgtagattctaatcgacatcttgcaactcatct 10183653  T
Q  430 ctgc 433  Q
    ||||    
T  10183654 ctgc 10183657  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 331 - 433
Target Start/End: Complemental strand, 10177423 - 10177321
Alignment:
Q  331 tgaaatatcagtgcagaagagaaaataacacatttgctgtcatgatcatatattttgtatgaactttgtagattctaattgacatcttgcaactcatctc 430  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  10177423 tgaaatatcagtgcaaaagagaaaataacacatttgttgtcatgatcacatattctgtatgaactttgtagattctaatcgacatcttgcaactcatctc 10177324  T
Q  431 tgc 433  Q
    |||    
T  10177323 tgc 10177321  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 330 - 431
Target Start/End: Complemental strand, 29749231 - 29749130
Alignment:
Q  330 gtgaaatatcagtgcagaagagaaaataacacatttgctgtcatgatcatatattttgtatgaactttgtagattctaattgacatcttgcaactcatct 429  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  29749231 gtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaactttgtagattttaatcgacatcttgcaactcatct 29749132  T
Q  430 ct 431  Q
    ||    
T  29749131 ct 29749130  T

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Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 29749369 - 29749296
Alignment:
Q  192 ttagagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29749369 ttagagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 29749296  T

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Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 10177558 - 10177487
Alignment:
Q  194 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10177558 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcagtctc 10177487  T

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Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 265
Target Start/End: Original strand, 10183425 - 10183491
Alignment:
Q  192 ttagagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 265  Q
    |||||||||||||||||||||||||||||||||||||||     ||||||  ||||||||||||||||||||||    
T  10183425 ttagagaactgctatatggtgcgacatatagcagcgacg-----cacgac--cacctccctcacgtgcactctc 10183491  T

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Target: scaffold0848 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0848
Description:

Target: scaffold0848; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 330 - 433
Target Start/End: Original strand, 2581 - 2684
Alignment:
Q  330 gtgaaatatcagtgcagaagagaaaataacacatttgctgtcatgatcatatattttgtatgaactttgtagattctaattgacatcttgcaactcatct 429  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  2581 gtgaaatatcagtgcataagagaaaataacacatttgctgtcatgatcacatattttgtatgaactttgtagagtctaatcgacatcttgcaactcatct 2680  T
Q  430 ctgc 433  Q
    ||||    
T  2681 ctgc 2684  T

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Target: scaffold0848; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 2446 - 2516
Alignment:
Q  195 gagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2446 gagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 2516  T

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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 330 - 433
Target Start/End: Complemental strand, 3980063 - 3979960
Alignment:
Q  330 gtgaaatatcagtgcagaagagaaaataacacatttgctgtcatgatcatatattttgtatgaactttgtagattctaattgacatcttgcaactcatct 429  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  3980063 gtgaaatatcagtgcaaaagagaaaataacacatttgctgtcatgatcacatattctgtatgaactttgtagattctaatcgacatcttgcaactcatct 3979964  T
Q  430 ctgc 433  Q
    ||||    
T  3979963 ctgc 3979960  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 3980197 - 3980126
Alignment:
Q  194 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3980197 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 3980126  T

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Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 330 - 427
Target Start/End: Original strand, 24791759 - 24791856
Alignment:
Q  330 gtgaaatatcagtgcagaagagaaaataacacatttgctgtcatgatcatatattttgtatgaactttgtagattctaattgacatcttgcaactcat 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  24791759 gtgaaatatcagtgcagaagagaaaataacacatttgctgtcatgatcacatattttgtatgaactttgtagattctaatcgacatcttgcaaatcat 24791856  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 24791622 - 24791693
Alignment:
Q  194 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24791622 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 24791693  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 265
Target Start/End: Original strand, 24815842 - 24815913
Alignment:
Q  194 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24815842 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 24815913  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 337 - 433
Target Start/End: Complemental strand, 47393293 - 47393197
Alignment:
Q  337 atcagtgcagaagagaaaataacacatttgctgtcatgatcatatattttgtatgaactttgtagattctaattgacatcttgcaactcatctctgc 433  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  47393293 atcagtgcagaagagaaaataacacatttgctgtcatgatcacatattttgtatgaactttgtagattctaatcgacatcttgcaactcatccctgc 47393197  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 47393399 - 47393328
Alignment:
Q  194 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47393399 agagaactgctatatggtgcgacatatagcagcgacgaaacgcacgacgtcacctccctcacgtgcactctc 47393328  T

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