View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12761_high_1 (Length: 689)
Name: NF12761_high_1
Description: NF12761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12761_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 121 - 674
Target Start/End: Complemental strand, 34377775 - 34377221
Alignment:
| Q |
121 |
aacggtgtgtttcataaaagaagttgattggataaaaaa-tttgatgtgtgatagtgtactaagaaggaaaaagttataataattcatacctcacaccaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
34377775 |
aacggtgtgtttcataaaagaagttgcttggataaaaaaatttgatgtgtgatagtgtactaagaaggagaaagttgtaataattcatacctcacaccaa |
34377676 |
T |
|
| Q |
220 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctct-tcaagacctggagtg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| ||| | || |||||||||| |
|
|
| T |
34377675 |
acacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctatgtcaaatttggtatcttctacacaaat-tctataaatacctggagtg |
34377577 |
T |
|
| Q |
319 |
tataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaagggaaatagcttt |
418 |
Q |
| |
|
|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||| ||||| |||||| |
|
|
| T |
34377576 |
tacaagattccattgtaccaaaaggtcttcatctctggacagtcattaattagtatccactcacatgctggcatctcaacgtagcaatggaaagagcttt |
34377477 |
T |
|
| Q |
419 |
cactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34377476 |
cactgaaacatttgaggctaggaagcttctttagtttaattttcatcagctttgggaatttaatcttagctttctgttgtaaacaattattcccaatgat |
34377377 |
T |
|
| Q |
519 |
ctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccggaatcacatattccaaatcattgcac |
618 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34377376 |
ctccttcatcttctcgcattcagacacatgaatcgacatcaaacttggaaggcttgtgaccacggaaacatccggaatcacatattccaaatcattgcac |
34377277 |
T |
|
| Q |
619 |
ttcttgatccttatctcttctaaacacccgaaccttaaagtttgaccatgattttt |
674 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34377276 |
ttcttgatccttatctcttgtaaatacccgaaccttaaagtttgaccatgattttt |
34377221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 192 - 674
Target Start/End: Original strand, 34549677 - 34550159
Alignment:
| Q |
192 |
agttataataattcatacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttct |
291 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34549677 |
agttgtaataattcatacctcacaccaaacactcaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttagtattttct |
34549776 |
T |
|
| Q |
292 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggca |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
34549777 |
acataaatctcttcaagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctgggcagtcattaattactatcaactcacattttggca |
34549876 |
T |
|
| Q |
392 |
tctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagcttt |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||||||| |
|
|
| T |
34549877 |
tctcaacatagcaagggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatatttcctccaatattggaaatttaatcttagcttt |
34549976 |
T |
|
| Q |
492 |
ctgttgtaaacaattattcccaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatcc |
591 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34549977 |
ctgttgtgaacaattattcctaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatcc |
34550076 |
T |
|
| Q |
592 |
ggaatcacatattccaaatcattgcacttcttgatccttatctcttctaaacacccgaaccttaaagtttgaccatgattttt |
674 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34550077 |
ggaatcacatattccaaatcattgcacttcttgatccttatctcttctaaacacccgaaccttaaagtttgaccatgattttt |
34550159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 34377891 - 34377810
Alignment:
| Q |
9 |
gaggagcagagagtgacgtagaatgggaagggaaaatgaatgaaggaaataatgtgtagctagcttctagacagtgctgttg |
90 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34377891 |
gaggaacagagagtgacgtagaatgggaagggaaaatgaatgaaggaaataatgtgtagctagcttctagacagtgctgttg |
34377810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 9e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 206 - 619
Target Start/End: Complemental strand, 135193 - 134766
Alignment:
| Q |
206 |
atacctcacaccaaacacacaatcatttattctgtcgttgtatcacttcattaacatcttcatctttgtcaaatttggtattttctacataaatctcttc |
305 |
Q |
| |
|
|||||||| ||||| ||| | |||||||||| |||||||||||||| |||||||||||||| | || ||||||||||||||||| || | |||| || | |
|
|
| T |
135193 |
atacctcataccaa-cactcgatcatttattgtgtcgttgtatcacgtcattaacatcttcgtattcgtcaaatttggtattttttaaagaaatttcata |
135095 |
T |
|
| Q |
306 |
aagacctggagtgtataagattccttcgtaccaaaaggtcttcatctctggacagtcattaattagtatcaactcacattttggcatctcaacatagcaa |
405 |
Q |
| |
|
||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||| | |||| ||| | ||||| ||||||||||| ||||||| |
|
|
| T |
135094 |
aagacgtggggtgtataagattccttcgaaccaaaaggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaa |
134995 |
T |
|
| Q |
406 |
gggaaatagctttcactgaaacatttgaggctaggaagcttctctagtaatattttcctcagctttgggaatttaatcttagctttctgttgtaaa---- |
501 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||||||||| ||| || ||| | | || ||||||||||| |||||||||||||||| | |
|
|
| T |
134994 |
gggaaagagctttgaccgaaacatttgaggctaggaagcttctgcagttcaatcttcattaatttcgggaatttaattttagctttctgttgtacacaat |
134895 |
T |
|
| Q |
502 |
-----------caattattcccaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatc |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||| ||| || |||| |||||| |||||||| |||||||||||| |
|
|
| T |
134894 |
cagtaggattgcaattattcccaatgatctccttcatcttctggcattcatacacaccaattaaccacaaatttggaatgcttgtgagcacggaaacatc |
134795 |
T |
|
| Q |
591 |
cggaatcacatattccaaatcattgcact |
619 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
134794 |
cggaagaacatattccaaatcattgcact |
134766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 503 - 626
Target Start/End: Complemental strand, 157400 - 157277
Alignment:
| Q |
503 |
aattattcccaatgatctccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccggaatcacata |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||| || || |||| |||||| |||||||| ||||||||||||| ||| ||||| |
|
|
| T |
157400 |
aattattcccaatgatctccttcatcttctggcattcatacacaccgataaaccacaaatttggaatgcttgtgagcacggaaacatccagaagaacata |
157301 |
T |
|
| Q |
603 |
ttccaaatcattgcacttcttgat |
626 |
Q |
| |
|
||||||||||||||| | |||||| |
|
|
| T |
157300 |
ttccaaatcattgcagtccttgat |
157277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 6111151 - 6111193
Alignment:
| Q |
17 |
gagagtgacgtagaatgggaagggaaaatgaatgaaggaaata |
59 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6111151 |
gagagtgaagtagaatgggaagggaaaatgaatgaaggaaata |
6111193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University