View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12761_high_2 (Length: 616)
Name: NF12761_high_2
Description: NF12761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12761_high_2 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 36466642 - 36467239
Alignment:
| Q |
19 |
cgtaacacataacaattaactgaaaaacagaactatatgaaaaatataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466642 |
cgtaacacataacaattaactgaaaaacagaactatatgaaaaatataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattg |
36466741 |
T |
|
| Q |
119 |
ctcatatagacttatatgctcctaaactttttaacttcagaaacaaggatgatttttactacaagaaaacatatatcagttacaagacaatatatcagag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466742 |
ctcatatagacttatatgctcctaaactttttaacttcagaaacaaggatgatttttactacaagaaaacatatatcagttacaagacaatatatcagag |
36466841 |
T |
|
| Q |
219 |
taaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaattttgcgcatctagtcatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466842 |
taaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaattttgcgcatctagtcatt |
36466941 |
T |
|
| Q |
319 |
aacatatatcagaaatgttattcttaataacatgcannnnnnnnatatatgcgtgatcaaacaattataatagatagcaggtggattttttgttaaataa |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466942 |
aacatatatcagaaatgttattcttaataacatgcattttttttatatatgcgtgatcaaacaattataatagatagcaggtggattttttgttaaataa |
36467041 |
T |
|
| Q |
419 |
agtaggcctaactacaaatgtaccatggcccccatatccataagatacaatctaacatttgtatatactttcaaagctaagaactaaaatgagttaattg |
518 |
Q |
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| T |
36467042 |
agtaggcctaactacaaatgtaccatggcccccatatccataagatacaatctaacatttgtatatactttcaaagctaagaactaaaatgagttaattg |
36467141 |
T |
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| Q |
519 |
ttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccatttaccttagatattagttcaatcctgcactgcctgcct |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467142 |
ttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccatttaccttagatattagttcaatcctgcactgcctgcct |
36467239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 21190101 - 21189758
Alignment:
| Q |
19 |
cgtaacacataacaattaactgaaaaacagaactatatgaaaaatataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
21190101 |
cgtaacacataacaattaactgaaaaacagaactatatgaaaattataaaaacaccagctactaaaccagaacaggaactgctatcagtacatgaaattg |
21190002 |
T |
|
| Q |
119 |
ctcatatagacttatatgctcct-aaactttttaacttcagaaacaaggatgatttttactacaagaaaacatatatcagttac--------------aa |
203 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
21190001 |
ctcatatagacttatatgctcctaaaactttttaacttcagaaacaaggataatttttactacaagaaaacatatatcagttacaagggtcaagagataa |
21189902 |
T |
|
| Q |
204 |
gacaatatatcagagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaatttt |
303 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
21189901 |
gacaatatatcatagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagacttgatatatatcatgtcaaagtaaatttt |
21189802 |
T |
|
| Q |
304 |
gcgcatctagtcattaacatatatcagaaatgttattcttaata |
347 |
Q |
| |
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|| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21189801 |
gcacatctagtcattaacatatctcagaaatgttattcttaata |
21189758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 8e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 372 - 609
Target Start/End: Original strand, 41467083 - 41467318
Alignment:
| Q |
372 |
tgatcaaacaattataatagatagcaggtggattttttgttaaataaagtaggcctaactacaaatgtaccatggcccccatatccataagatacaatct |
471 |
Q |
| |
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||||||||||| ||||||||||||| ||| | ||| ||||||||||||||||||| |||||||||| ||||||||| || ||||||| ||||||||| |
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| T |
41467083 |
tgatcaaacaaacataatagatagcaagtgaacatttagttaaataaagtaggcctagatacaaatgtaacatggcccc-atgtccataatatacaatct |
41467181 |
T |
|
| Q |
472 |
aacatttgtatatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttat |
571 |
Q |
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|||||||| ||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||| |
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| T |
41467182 |
aacatttgaatatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtc-atggctaacaaggatactataattttat |
41467280 |
T |
|
| Q |
572 |
agcccatttaccttagatattagttcaatcctgcactg |
609 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||| |
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| T |
41467281 |
agcctatttaccttagataatagttcaatcctgcactg |
41467318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 146 - 354
Target Start/End: Complemental strand, 40568293 - 40568067
Alignment:
| Q |
146 |
tttttaacttcagaaacaaggatgatttttactacaagaaaacatatatcagttacaag--------------acaatatatcagagtaaattaga--ct |
229 |
Q |
| |
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||||||| || ||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||| | | || |
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| T |
40568293 |
tttttaagttaagaaacaagaatgatttttactacaagaaaaaatatatccgttacaaggttcaagcgataagacaatatatcagagtaaatcaaattct |
40568194 |
T |
|
| Q |
230 |
caattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaattttgcgcatct--agtcattaacatatat |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||| ||||| ||||||||| |||||| |
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|
| T |
40568193 |
caattcagaattcactgctgcaaaaatgatttttctcccgaagactcaatatatatcatgtcaaagtaaattttgcacatctagagtcattaatatatat |
40568094 |
T |
|
| Q |
328 |
cagaaatgttattcttaataacatgca |
354 |
Q |
| |
|
||||||||| | || || ||||||||| |
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| T |
40568093 |
cagaaatgtgaatcctactaacatgca |
40568067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 463 - 572
Target Start/End: Complemental strand, 41703942 - 41703833
Alignment:
| Q |
463 |
atacaatctaacatttgtat-atactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatact |
561 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||| |||| | || | |||||||||||| || |
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| T |
41703942 |
atacaagctaacatctgtattatactttcaaaactaagaactaacatgagttaattgttcattaaaacctaaaaaaacgtct-tagctaacaaggatcct |
41703844 |
T |
|
| Q |
562 |
ataatgttata |
572 |
Q |
| |
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||||||||||| |
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| T |
41703843 |
ataatgttata |
41703833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 202 - 354
Target Start/End: Complemental strand, 30747452 - 30747300
Alignment:
| Q |
202 |
aagacaatatatcagagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaatt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
30747452 |
aagacaatatatcagagtaaattagactcaattcagaatttactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgttaaagtaaatt |
30747353 |
T |
|
| Q |
302 |
ttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgca |
354 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30747352 |
ttgcgcatctagttattaacatatatcagaaatgttattcttgataacatgca |
30747300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 202 - 354
Target Start/End: Complemental strand, 30768903 - 30768751
Alignment:
| Q |
202 |
aagacaatatatcagagtaaattagactcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaagtaaatt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
30768903 |
aagacaatatatcagagtaaattagactcaattcagaatttactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgttaaagtaaatt |
30768804 |
T |
|
| Q |
302 |
ttgcgcatctagtcattaacatatatcagaaatgttattcttaataacatgca |
354 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30768803 |
ttgcgcatctagttattaacatatatcagaaatgttattcttgataacatgca |
30768751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 122
Target Start/End: Complemental strand, 8697147 - 8697060
Alignment:
| Q |
35 |
taactgaaaaacagaactatatgaaaaatataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctca |
122 |
Q |
| |
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||||||||||||| ||||||||||| || | ||||||| || ||||||||||| |||||||||||| ||| |||||| | |||||||| |
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|
| T |
8697147 |
taactgaaaaacaaaactatatgaagaacagaaaaacatcaactactaaaccagaacaggaactgccatcagtacataacattgctca |
8697060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 20625920 - 20625781
Alignment:
| Q |
66 |
aaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttatatgctcct-aaactttttaacttcagaaacaa |
164 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||| |||||||| |||| ||||| ||| |||||||||||| |||||||||| || |||||||| |
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| T |
20625920 |
aaaaacaccaactattaaaccaaaacaggaactgccatcagtacatgacattggtcataaagatttatatgctcctaaaactttttaggttaagaaacaa |
20625821 |
T |
|
| Q |
165 |
ggatgatttttactacaagaaaacatatatcagttacaag |
204 |
Q |
| |
|
||||||||||||||| ||||||| ||||| || ||||||| |
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| T |
20625820 |
ggatgatttttactaaaagaaaaaatataccatttacaag |
20625781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 19877 - 19772
Alignment:
| Q |
35 |
taactgaaaaacagaactatatgaaaaatataaaaacaccagctactaaaccaaaacaggaactgctatcggtacatgaaattgctcatatagacttata |
134 |
Q |
| |
|
||||||||||||| |||||||| || || | ||||||| || ||||||||||| ||||| |||||| ||| |||||| | ||||||| ||||||||| |
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|
| T |
19877 |
taactgaaaaacaaaactatataaagaacagaaaaacatcaactactaaaccagaacagaaactgccatcagtacataacattgctc----agacttata |
19782 |
T |
|
| Q |
135 |
tgctcctaaa |
144 |
Q |
| |
|
||||||||| |
|
|
| T |
19781 |
cgctcctaaa |
19772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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