View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12761_high_3 (Length: 446)
Name: NF12761_high_3
Description: NF12761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12761_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 24108402 - 24108822
Alignment:
| Q |
1 |
tcatttggaataaatgtaaaataaaaactagtgtcatagtttttaatattaacttaactagatttcaaattaacgaccaccatatggtacgtagtatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24108402 |
tcatttggaataaatgtaaaataaaaactagtgtcatagtttttaatattaacttaactagatttcaaattaaggaccaccatatggtacgtagtatgtt |
24108501 |
T |
|
| Q |
101 |
tatgatgttgcctaataaagagaaaggttatttaagatcaatagttataagtggtgcatttttatacgatgttaaatgtattgtcatgttttttagatgt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
24108502 |
tatgatgttgcttaataaagagaaaggttatttaagatcaatagttataagtggtgcatttttatacgatgttaaatgtattgttaagttttttagatgt |
24108601 |
T |
|
| Q |
201 |
tcaaataacattcaatannnnnnnnnnnnnnnnaaagaagcaaataacattcagtatttattaatttaggagaatgctaaccagtgtcctaaatgcatta |
300 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||| | | ||||||||||||||||||||||| || | ||| |||||| |
|
|
| T |
24108602 |
ttaaataacattcaatatttttttttt-------aagaagcaaataacattta----atgttaatttaggagaatgctaaccaatgccttaagggcatta |
24108690 |
T |
|
| Q |
301 |
atttaaatacaatgtgaatgatcttcattactattatgacaatgtttcacattttgaaagtttatacttgaatttagaatatgagttttcataatttgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24108691 |
atttaaatacaatgtgaatgatcttcattattattatgacaatgtttcacattttgaaagtttatacttgaatttagaatatgagttttcataatttgat |
24108790 |
T |
|
| Q |
401 |
atgatagatctgttgattagtttgcttatggt |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24108791 |
atgatagatctgttgattagtttgcttatggt |
24108822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University