View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12761_high_5 (Length: 337)

Name: NF12761_high_5
Description: NF12761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12761_high_5
NF12761_high_5
[»] chr5 (5 HSPs)
chr5 (165-329)||(25379545-25379712)
chr5 (165-329)||(25482822-25482989)
chr5 (18-138)||(25379739-25379859)
chr5 (18-134)||(25483023-25483139)
chr5 (18-136)||(17515219-17515335)
[»] chr1 (6 HSPs)
chr1 (165-329)||(28247447-28247616)
chr1 (165-329)||(11471424-11471603)
chr1 (18-138)||(28247299-28247418)
chr1 (18-138)||(11471631-11471750)
chr1 (18-138)||(50027170-50027289)
chr1 (165-329)||(50027316-50027485)
[»] chr6 (4 HSPs)
chr6 (165-329)||(19310136-19310309)
chr6 (165-329)||(10126345-10126520)
chr6 (18-138)||(19309990-19310109)
chr6 (18-138)||(10126199-10126317)
[»] chr2 (4 HSPs)
chr2 (165-329)||(38255263-38255438)
chr2 (18-138)||(38255116-38255235)
chr2 (18-138)||(43154308-43154427)
chr2 (165-239)||(43154203-43154280)
[»] chr7 (3 HSPs)
chr7 (18-138)||(22492079-22492198)
chr7 (193-329)||(22492235-22492377)
chr7 (18-136)||(37163106-37163222)
[»] chr4 (3 HSPs)
chr4 (18-138)||(48793106-48793224)
chr4 (22-136)||(26283530-26283644)
chr4 (200-273)||(48792964-48793034)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 165 - 329
Target Start/End: Complemental strand, 25379712 - 25379545
Alignment:
Q  165 ccttatgatgccacagtcatggcaggttg---gcggcggcggtgatcgacggtggacggaaaactgatgatgatgatggtgagtgagtttgttttgaagt 261  Q
    ||||||||||||| |||||||||||||||   ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  25379712 ccttatgatgccatagtcatggcaggttgacagcggcggcgatgatcgacggtggacggaaaactcatgatgatgatggtgagtgagcttgttttgaagt 25379613  T
Q  262 ggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctctcagtcatgtgttctct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25379612 ggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctctcagtcatgtgttctct 25379545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 165 - 329
Target Start/End: Complemental strand, 25482989 - 25482822
Alignment:
Q  165 ccttatgatgccacagtcatggcaggttg---gcggcggcggtgatcgacggtggacggaaaactgatgatgatgatggtgagtgagtttgttttgaagt 261  Q
    ||||||||||||||| |||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||    
T  25482989 ccttatgatgccacattcatggcaggttgatggcggcggcggtgatcgacggtggacagaaaactgatgatgatgatggcgagggagtttgttttgaagt 25482890  T
Q  262 ggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctctcagtcatgtgttctct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  25482889 ggaaggaggaagcagaagggttagcgcgcgttttctatttcactcgttctcttagtcacgtgttctct 25482822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 25379859 - 25379739
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25379859 gaaactagttcaaaaacgattgttttatcttcttgatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 25379760  T
Q  118 tatgaacatttcaatcattct 138  Q
    |||||||||||||||||||||    
T  25379759 tatgaacatttcaatcattct 25379739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 25483139 - 25483023
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25483139 gaaactagttcaaaaacgattgttttatcttcttgatcaagtgttgttattctctattttcataaaaattttgatttttattatgggttaatctcatttc 25483040  T
Q  118 tatgaacatttcaatca 134  Q
    |||||||||||||||||    
T  25483039 tatgaacatttcaatca 25483023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 17515219 - 17515335
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    |||||||||||||||| | ||||||  |  || ||||||||||||  |||||| |  |||||| ||||||||||||| |||||||| ||  |||||||      
T  17515219 gaaactagttcaaaaaggtttgtttagt--tcctaatcaagtgttcctattctttgctttcattgaaattttgatttctattatggtttgttctcattca 17515316  T
Q  118 tatgaacatttcaatcatt 136  Q
    ||||| |||||||||||||    
T  17515317 tatgagcatttcaatcatt 17515335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 165 - 329
Target Start/End: Original strand, 28247447 - 28247616
Alignment:
Q  165 ccttatgatgccacagtcatggcaggttg---gcggcggcggtgatcgacggtggacggaaaactgatgatgatgatggtga----gtgagtttgttttg 257  Q
    |||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  28247447 ccttatgatgccacagtcatggtaggttgacggcggcggcggtgatcgacggtggacggaaaactgatgatgatgatggtgagtgagtgagtttgttttg 28247546  T
Q  258 aagtggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctctcagtcatgtgttctct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  28247547 aagtggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctct--gtcacgtgttctct 28247616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 165 - 329
Target Start/End: Complemental strand, 11471603 - 11471424
Alignment:
Q  165 ccttatgatgccacagtcatggcaggttg---gcggcggcggtgatcgacggtggacggaaaactgatgatgatgatg--------------gtgagtga 247  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||              ||||||||    
T  11471603 ccttatgatgccacagtcatggcaggttgacggcggcggcggtgatcgacggtggacggaaaactgatgatgatgatgatgatggtgagtgagtgagtga 11471504  T
Q  248 gtttgttttgaagtggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctctcagtcatgtgttctct 329  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||    
T  11471503 gtttgttttgaagtggaaggaggaagcagaagagttagcgcgcgttttctatttcactccttctct--gtcacgtgttctct 11471424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 28247299 - 28247418
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28247299 gaaactagttcaaaaacaattgttttatct-cttgatcaactgttgttattctctattttcatagaaattttgatttttattacgggttaatctcatttc 28247397  T
Q  118 tatgaacatttcaatcattct 138  Q
    |||||||||||||||||||||    
T  28247398 tatgaacatttcaatcattct 28247418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 11471750 - 11471631
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    ||||||||||||||||  |||||||||||| ||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11471750 gaaactagttcaaaaataattgttttatct-cttgatcaaccgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 11471652  T
Q  118 tatgaacatttcaatcattct 138  Q
    |||||| ||||||||||||||    
T  11471651 tatgaatatttcaatcattct 11471631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 50027170 - 50027289
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||    
T  50027170 gaaactagttcaaaaacggttgttttatcttcttgatcaagtgttgttattctctattttcatataaattttga-ttttattttgggttaatctcatttc 50027268  T
Q  118 tatgaacatttcaatcattct 138  Q
    ||||| ||| |||||||||||    
T  50027269 tatgaccatatcaatcattct 50027289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 165 - 329
Target Start/End: Original strand, 50027316 - 50027485
Alignment:
Q  165 ccttatgatgccacagtcatggcaggttg---gcggcggcggtgatcgacggtggacggaaaactgatgatgatgatggtgagtgagtttgttttgaagt 261  Q
    |||||||||| |||| ||||||||| |||   ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50027316 ccttatgatgacacattcatggcagcttgacggcggcggcggtgaccgacggtggacggaaaactgatgatgattatggtgagtgagtttgttttgaagt 50027415  T
Q  262 ggaaggaggaagcagaagggtt--agcgcgcgttttctatttcactccttctctcagtcatgtgttctct 329  Q
    |||||| ||||||| |||||||   ||||||||||||||||||| |  |||||||| ||| || ||||||    
T  50027416 ggaaggtggaagcaaaagggttggcgcgcgcgttttctatttcattggttctctcactcacgtattctct 50027485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 165 - 329
Target Start/End: Original strand, 19310136 - 19310309
Alignment:
Q  165 ccttatgatgccacagtcatggcaggttg---gcggcggcggtgatcgacggtggacggaaaactgat------gatgatgatggtgagtgagtttgttt 255  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  19310136 ccttatgatgccacagtcatggcaggttgacggcggcggcggtgatcgacggtggacggaaaactgatgatgatgatgatgatggtgagtgagtttgttt 19310235  T
Q  256 tgaagtggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctctcagtcatgtgttctct 329  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||||||    
T  19310236 tgaagtggaaggaggaagcagaagggttagcgcacattttccatttcactccttctctcagtcacgtgttctct 19310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 165 - 329
Target Start/End: Original strand, 10126345 - 10126520
Alignment:
Q  165 ccttatgatgccacagtcatggcaggttg---gcggcggcggtgatcgacggtggacggaaaactgatgatgatgatg----------gtgagtgagttt 251  Q
    ||||||||||||||| |||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||||          ||||||||||||    
T  10126345 ccttatgatgccacaatcatggcaggttgacggcggcggcggtgatcaacggtggacggaaaactgatgatgatgatgatgatggtgagtgagtgagttt 10126444  T
Q  252 gttttgaagtggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctctcagtcatgtgttctct 329  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  10126445 gttttaaagtggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctct--gtcacgtgttctct 10126520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 19309990 - 19310109
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19309990 gaaactagttcaaaaacaattgttttatct-cttgatcaactgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 19310088  T
Q  118 tatgaacatttcaatcattct 138  Q
    ||||| |||||||||||||||    
T  19310089 tatgatcatttcaatcattct 19310109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 10126199 - 10126317
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    ||||||||||||||||  ||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10126199 gaaactagttcaaaaaaaattattttatct-cttgatcaactgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 10126297  T
Q  118 tatgaacatttcaatcattct 138  Q
    ||| |||||||||||||||||    
T  10126298 tat-aacatttcaatcattct 10126317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 165 - 329
Target Start/End: Original strand, 38255263 - 38255438
Alignment:
Q  165 ccttatgatgccacagtcatggcaggttg---gcggcggcggtgatcgacggtggacggaaaactgatgatgatgatg----------gtgagtgagttt 251  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||    
T  38255263 ccttatgatgccacagtcatggcaggttgacggcggcggcggtgatcgacggtggacggaaaactgatgatgatgatgatgatggtgagtgagtgagttt 38255362  T
Q  252 gttttgaagtggaaggaggaagcagaagggttagcgcgcgttttctatttcactccttctctcagtcatgtgttctct 329  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||    
T  38255363 gttttgaagtggaaggaggaagcagaagagttagcgcgcgttttctatttcactccttctct--gtcacgtgttctct 38255438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 38255116 - 38255235
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    ||||||||||||||||| |||||||||||| ||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38255116 gaaactagttcaaaaacaattgttttatct-cttgatcaaccgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 38255214  T
Q  118 tatgaacatttcaatcattct 138  Q
    |||||||||||||||||||||    
T  38255215 tatgaacatttcaatcattct 38255235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 43154427 - 43154308
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    ||||||||||||||||| |||||||||||| ||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43154427 gaaactagttcaaaaacaattgttttatct-cttgatcaaccgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 43154329  T
Q  118 tatgaacatttcaatcattct 138  Q
    |||||||||||||||||||||    
T  43154328 tatgaacatttcaatcattct 43154308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 43154280 - 43154203
Alignment:
Q  165 ccttatgatgccacagtcatggcaggttggcggcgg---cggtgatcgacggtggacggaaaactgatgatgatgatg 239  Q
    ||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||| ||||||||||||||||||    
T  43154280 ccttatgatgccacagtcatggcaggttgacggcggtggcggtgatcgacggtggacggtaaactgatgatgatgatg 43154203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 22492079 - 22492198
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    ||||||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22492079 gaaactagttcaaaaacaattgttttatcttcttgat-aagtgttgctattctctattttcatagaaattttgatttttattatgggttaatctcatttc 22492177  T
Q  118 tatgaacatttcaatcattct 138  Q
    |||||||||||||||||||||    
T  22492178 tatgaacatttcaatcattct 22492198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 193 - 329
Target Start/End: Original strand, 22492235 - 22492377
Alignment:
Q  193 ggcggcggcggtgatcgacggtggacggaaaactgatgatgatg------atggtgagtgagtttgttttgaagtggaaggaggaagcagaagggttagc 286  Q
    |||||||| |||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22492235 ggcggcggtggtgatcgacggtggacggaaaactgatgatgatgaggatgatggtgagtgagtttgttttgaagtggaaggaggaagcagaagggttaac 22492334  T
Q  287 gcgcgttttctatttcactccttctctcagtcatgtgttctct 329  Q
    |||||||||||||||||||| ||||||||||||  ||||||||    
T  22492335 gcgcgttttctatttcactcgttctctcagtcacatgttctct 22492377  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 37163222 - 37163106
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    |||||||||||||||| | ||||||| |  || ||||||||||||  |||||| |  |||||| ||||||||||||| |||||||| ||  |||||||      
T  37163222 gaaactagttcaaaaaggtttgttttgt--tcctaatcaagtgttcctattctttcctttcattgaaattttgatttctattatggtttgttctcattca 37163125  T
Q  118 tatgaacatttcaatcatt 136  Q
    ||||| |||||||||||||    
T  37163124 tatgagcatttcaatcatt 37163106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 48793224 - 48793106
Alignment:
Q  18 gaaactagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttc 117  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  48793224 gaaactagttcaaaaacgattattttatcttcttgatcaagtgttgttattctctattttcatagaaaatttg-ttttttttatgggttaatctcatttc 48793126  T
Q  118 tatgaacatttcaatcattct 138  Q
    |||||||| ||||||||||||    
T  48793125 tatgaaca-ttcaatcattct 48793106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 26283530 - 26283644
Alignment:
Q  22 ctagttcaaaaacgattgttttatcttcttaatcaagtgttgttattctctattttcatagaaattttgatttttattatgggttaatctcatttctatg 121  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||  |  ||||||| ||||| || |||| || |||||||| |||||    
T  26283530 ctagttcaaaaacgtttgttttatcttcttgatcaagtgttgttattctctatttttgtttaaattttaattttaatcatggtttgatctcattcctatg 26283629  T
Q  122 aacatttcaatcatt 136  Q
    | |||||||||||||    
T  26283630 agcatttcaatcatt 26283644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 48793034 - 48792964
Alignment:
Q  200 gcggtgatcgacggtggacggaaaactgatgatgatgatggtgagtgagtttgttttgaagtggaaggaggaag 273  Q
    |||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  48793034 gcggcgatcgacggtggacggaaaactgatgatgatg---gtgagtgagtttgttttgaagtggaaggaggaag 48792964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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