View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12761_low_7 (Length: 317)
Name: NF12761_low_7
Description: NF12761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12761_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 38307422 - 38307134
Alignment:
| Q |
15 |
gaagaaagcattaatcgattttgatcacgttagaataggaaataaatgtattacaatgagcgtcaaatgtgctagctgtggcagctgtagcagtaagagt |
114 |
Q |
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| T |
38307422 |
gaagaaagcattaatcgattttgatcacgttagaataggaaataaatgtattacaatgagcgttaaatgtgctagctgtggcagctgtagcagtaagagt |
38307323 |
T |
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| Q |
115 |
agtgatatcatcatgagctgatcacagaaacaaggtggtcgcactcagcccccattgcttcagcagcctccactcattgcgcttccagtaatgttgcagc |
214 |
Q |
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| T |
38307322 |
agtgatatcatcatgagctgatcacggaaacaaggtggtcgcactcagcccccattgcttcagcagcctccactcattgtgcttccagtaatgttgcagc |
38307223 |
T |
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| Q |
215 |
tgaagcaacagccatgtcagttttgggcattgtctcgcccttgtttggtgttgatgaggcaactgtggtagccacaatggttgttattg |
303 |
Q |
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| T |
38307222 |
tgaagcaacagccatgtcagttttgggcattgtctcgcccttgtttggtgttgatgaggcaactgtggtagccgcaatggttgttattg |
38307134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 38268679 - 38268536
Alignment:
| Q |
128 |
tgagctgatcacagaaacaaggtggtcgcactcagcccccattgcttcagcagcctccactcattgcgcttccagtaatgttgcagctgaagcaacagcc |
227 |
Q |
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| T |
38268679 |
tgagctgaccaccgatgcaaggtggtcgcgctcagctcccattgcttcggcagcctccacacattgtgcggcaactagagtggcagccgaagcaacagcc |
38268580 |
T |
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| Q |
228 |
atgtcagttttgggcattgtctcgcccttgtttggtgttgatga |
271 |
Q |
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| T |
38268579 |
acgtctgtcttggccatcttctcatccttgttttgtgttgatga |
38268536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 38268737 - 38268696
Alignment:
| Q |
90 |
ctgtggcagctgtagcagtaagagtagtgatatcatcatgag |
131 |
Q |
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| T |
38268737 |
ctgtggcagctgcagcagtaagagtagtgatatcatcatgag |
38268696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 31707355 - 31707396
Alignment:
| Q |
90 |
ctgtggcagctgtagcagtaagagtagtgatatcatcatgag |
131 |
Q |
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| T |
31707355 |
ctgtggcagctgcagcagttagagtagtgatatcatcatgag |
31707396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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