View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12761_low_9 (Length: 290)
Name: NF12761_low_9
Description: NF12761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12761_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 28494409 - 28494679
Alignment:
| Q |
18 |
caacttcccacatgcaactcctaactcggcgttgatgtcatgttaactagatttgaatctcatgcaaaaaataagcttaaaagatgatggtgtccaaaca |
117 |
Q |
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| T |
28494409 |
caacttcccacatgcaactcctaactcggcgttgatgtcatgttaactagatttaaatctcatgcaaaaaataagcttaaaagatgatggtgtccaaaca |
28494508 |
T |
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| Q |
118 |
catattcataatctcaatagtcttgagctatatatgcgagactttaaataacttcaataatagaatcattaatttggatgagagtttgtaataaaattta |
217 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28494509 |
catattcctaatctcaatagtcttgagctatataggtgagactttaaataacttca--aatagaatcattaatttggatgagagtttgtaataaaattta |
28494606 |
T |
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| Q |
218 |
cttagagtctaataattagagaactttgagaaatttacttacatctcccgcgttttctatatcttctttctat |
290 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28494607 |
cttacagtctaataattagagaagtttgagaaatttacttacatctcccgcattttctatatcttctttctat |
28494679 |
T |
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