View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_high_14 (Length: 313)
Name: NF12762_high_14
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 50364117 - 50364398
Alignment:
| Q |
19 |
ctcacaagttgttcgagtggagctggaggctaaactttcaaatgtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtatttcaca |
118 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
50364117 |
ctcacaagttgttcgagtggagcaggaggctggactttcaaacgtctgcttggaaacttgtagataaataaaaatagatgttgtgatctggtatttcaca |
50364216 |
T |
|
| Q |
119 |
tgacttattccctcaaaaataaatttgttgcgagagatccaaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
50364217 |
tgacttattccctcaaaaataaatttgttgcgagagatccaaatat--cccacattatcaatggagctaagatacccacttcaaccactaaggtcgctat |
50364314 |
T |
|
| Q |
219 |
gatcttcgaagtattgtctaaaccaaccttgtgacacattgcttgaacatcactaaactcacaatcagtatgttattcatctca |
302 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50364315 |
gatcttcgaagtattatctaaaccaaccttgtgacacattgcttgaacatcactaaactcacaatcagtatgttattcaactca |
50364398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 59 - 283
Target Start/End: Complemental strand, 10795078 - 10794856
Alignment:
| Q |
59 |
aatgtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtatttcacatgacttattccctcaaaaataaatttgttgcgagagatcc |
158 |
Q |
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|||| |||||||||||||||||| | | |||||||||||||| | || | ||| |||| | || || |||||| |||||||||||||||||||||||||| |
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| T |
10795078 |
aatgcctgcttggaaacttgtagctgagtaaagatagatgttatgatctagtacttcataggagttgttcccttaaaaataaatttgttgcgagagatcc |
10794979 |
T |
|
| Q |
159 |
aaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaagtattgtctaaaccaaccttgtgacacatt |
258 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||| ||||||| || |||| |||||| ||||||||||||| | ||||||||||||| ||| |
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| T |
10794978 |
aaatatt--ccacattatcaatggagctaagatacccacttcatccactaatgtcgctaggatctttgaagtattgtctagaacaaccttgtgacaaatt |
10794881 |
T |
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| Q |
259 |
gcttgaacatcactaaactcacaat |
283 |
Q |
| |
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| | || ||||||||||| |||||| |
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| T |
10794880 |
gatagagcatcactaaacccacaat |
10794856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 15581286 - 15581196
Alignment:
| Q |
186 |
taagatacccacttcaaccactaaggttgctatgatcttcgaagtattgtctaaaccaaccttgtgacacattgcttgaacatcactaaac |
276 |
Q |
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|||||| || |||||| |||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
15581286 |
taagatgcctacttcagccactaagattgctgagatctttgaagtattctctagaccaaccttgtgacacatttcttgaacatcactaaac |
15581196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 59 - 280
Target Start/End: Complemental strand, 50076447 - 50076228
Alignment:
| Q |
59 |
aatgtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtatttcacatgacttattccctcaaaaataaatttgttgcgagagatcc |
158 |
Q |
| |
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|||| |||||||||||||||||| | | |||||||||||||| | || | ||| |||| | || || || ||| |||||||||||||||||||||||| | |
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| T |
50076447 |
aatgcctgcttggaaacttgtagctgagtaaagatagatgttatgatctagtacttcataggagttgtttccttaaaaataaatttgttgcgagagattc |
50076348 |
T |
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| Q |
159 |
aaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaagtattgtctaaaccaaccttgtgacacatt |
258 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||| ||||||| || |||| |||||| ||||||||||||| | ||||||||||||| ||| |
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| T |
50076347 |
aaatatt--ccacattatcaatggagctaagatacccacttcatccactaatgtcgctaggatctttgaagtattgtctagaacaaccttgtgacaaatt |
50076250 |
T |
|
| Q |
259 |
gcttgaacatcactaaactcac |
280 |
Q |
| |
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| | |||||||||||||||||| |
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| T |
50076249 |
gatagaacatcactaaactcac |
50076228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 62 - 279
Target Start/End: Complemental strand, 41405605 - 41405390
Alignment:
| Q |
62 |
gtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtatttcacatgacttattccctcaaaaataaatttgttgcgagagatccaaa |
161 |
Q |
| |
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|||||||||||||| ||||| | | ||||| |||||||| | || ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
41405605 |
gtctgcttggaaacctgtagttgagtaaagttagatgttatgatgtggtacttcacatgagttattcccttaaaaataaatttgttgcgagagatccaa- |
41405507 |
T |
|
| Q |
162 |
tatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttcgaagtattgtctaaaccaaccttgtgacacattgct |
261 |
Q |
| |
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|||| |||| |||||||| ||| ||||||||||||| || ||||||||||| | |||||| ||||||||||||| |||| |||| | |||||||||| |
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| T |
41405506 |
-atattccacgttatcaatagagctaagatacccactccatccactaaggttatgaggatctttgaagtattgtctagaccagccttctcacacattgct |
41405408 |
T |
|
| Q |
262 |
tgaacatcactaaactca |
279 |
Q |
| |
|
|||||||| ||||||||| |
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| T |
41405407 |
tgaacatccctaaactca |
41405390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 25584274 - 25584082
Alignment:
| Q |
18 |
actcacaagttgttcgagtggagctggaggctaaactttcaaatgtctgcttggaaacttgtagataaataaagatagatgttgtaatatggtatttcac |
117 |
Q |
| |
|
|||||||||||||| || |||| | |||| | |||| |||| |||||||| ||||||||||| || |||| ||||||||||| || ||||| ||||| |
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| T |
25584274 |
actcacaagttgtttgatgggagttagaggttggacttccaaacgtctgcttcgaaacttgtagccaagtaaatatagatgttgtgatctggtacttcac |
25584175 |
T |
|
| Q |
118 |
atgacttattccctcaaaaataaatttgttgcgagagatccaaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggt |
212 |
Q |
| |
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| | ||||||||| ||| |||||||| |||||||||||||| |||| | ||||||||||||||| ||||||||||||||| ||| ||||||| |
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| T |
25584174 |
aaaagttattccctgaaagataaatttactgcgagagatccaa--atattcaacattatcaatggagctaagatacccacttcgaccgctaaggt |
25584082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 34540598 - 34540490
Alignment:
| Q |
126 |
ttccctcaaaaataaatttgttgcgagagatccaaatatatcccacattatcaatggagttaagatacccacttcaaccactaaggttgctatgatcttc |
225 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||| |||| | ||||||||| ||| ||||||| |||||||| |||||||| |||||| ||||| |
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| T |
34540598 |
ttccctaaaaaataaatttgttacgagagatccaa--atattcttcattatcaaccgagctaagatatccacttcacccactaagattgctaggatctct |
34540501 |
T |
|
| Q |
226 |
gaagtattgtc |
236 |
Q |
| |
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||| ||||||| |
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| T |
34540500 |
gaaatattgtc |
34540490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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