View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_high_21 (Length: 206)
Name: NF12762_high_21
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 9796323 - 9796278
Alignment:
| Q |
17 |
aaggtggaggtgcggaaggagttatgataggtggtgatggagaagg |
62 |
Q |
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| T |
9796323 |
aaggtggaggtgcggaaggagttatgataggtggtgatggagaagg |
9796278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 9802324 - 9802279
Alignment:
| Q |
17 |
aaggtggaggtgcggaaggagttatgataggtggtgatggagaagg |
62 |
Q |
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| T |
9802324 |
aaggtggaggtgcggaaggagttatgataggtggtgatggagaagg |
9802279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 9796215 - 9796180
Alignment:
| Q |
152 |
ttgaaggagtatcaacaggtggtggtgtggaaagac |
187 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9796215 |
ttgaaggagtatcaacaggtggtggtgtggaaagac |
9796180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 9802204 - 9802169
Alignment:
| Q |
152 |
ttgaaggagtatcaacaggtggtggtgtggaaagac |
187 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9802204 |
ttgaaggagtatcaacaggtggtggtgtggaaagac |
9802169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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