View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_high_6 (Length: 423)
Name: NF12762_high_6
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 11631067 - 11631381
Alignment:
| Q |
11 |
cacagaatatccagatttcatggagaagcctgacaaacctacctgcaaatcaaagaatgtgattggaaaactttttcgggaaattcaaagtatttcaaca |
110 |
Q |
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| T |
11631067 |
cacagaatatccagatttcatggagaagcctgacaaacctatctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaaca |
11631166 |
T |
|
| Q |
111 |
aaggacggctctgttacatccttcacgttggaagtggctaaagagtcctatgatttgggcatggaattcgacggatttatggattatgttgacaatgcct |
210 |
Q |
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| T |
11631167 |
aaggacggctctattacatctttcacattggaagtggctaaagagtcctatgattccgacatggaattcgagggctttatggattatgttgacgatgcat |
11631266 |
T |
|
| Q |
211 |
tctatcacaaaaccaattatgactacaaattgggaaatctgatgaactactatggtatcaaaactgaagcggaaatcctaagtgggaatattatgaaaat |
310 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
11631267 |
tctatcacaaaaccaattatgactacaagttgggaaatctgatggactactatggtatcaaaactgaagcagaaatcctaagtggaaatattatgaaaat |
11631366 |
T |
|
| Q |
311 |
gtcgaaatctttcac |
325 |
Q |
| |
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||| ||||||||||| |
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| T |
11631367 |
gtcaaaatctttcac |
11631381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 11675571 - 11675259
Alignment:
| Q |
14 |
agaatatccagatttcatggagaagcctgacaaacctacctgcaaatcaaagaatgtgattggaaaactttttcgggaaattcaaagtatttcaacaaag |
113 |
Q |
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| T |
11675571 |
agaatatccagacttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaactgag |
11675472 |
T |
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| Q |
114 |
gacggctctgttacatccttcacgttggaagtggctaaagagtcctatgatttgggcatggaattcgacggatttatggattatgttgacaatgccttct |
213 |
Q |
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| T |
11675471 |
ggtggttctcttacatcctttacacttgaagtggctaaggagtcatatgattcggatatggaattcgagggctttatggattatgtcgacgatgccttct |
11675372 |
T |
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| Q |
214 |
atcacaaaaccaattatgactacaaattgggaaatctgatgaactactatggtatcaaaactgaagcggaaatcctaagtgggaatattatgaaaatgtc |
313 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
11675371 |
atcacaaaaccaattatgactacaagttgggaaatctgatggactactatggtatcaaaactgaatcagaaatcctaagtgggaatattatgaaaatgtc |
11675272 |
T |
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| Q |
314 |
gaaatctttcacc |
326 |
Q |
| |
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||||||||||||| |
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| T |
11675271 |
gaaatctttcacc |
11675259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 11683058 - 11682746
Alignment:
| Q |
14 |
agaatatccagatttcatggagaagcctgacaaacctacctgcaaatcaaagaatgtgattggaaaactttttcgggaaattcaaagtatttcaacaaag |
113 |
Q |
| |
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|||||||||||| |||||||| |||||||||||| | |||| ||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||| |
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| T |
11683058 |
agaatatccagacttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaacaaat |
11682959 |
T |
|
| Q |
114 |
gacggctctgttacatccttcacgttggaagtggctaaagagtcctatgatttgggcatggaattcgacggatttatggattatgttgacaatgccttct |
213 |
Q |
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||||| ||| ||||||||||||| | ||||||||||||||||| ||||| | |||||||||| || ||||||||||||| ||| |||| |||| |
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| T |
11682958 |
gacggttctattacatccttcacacttgaagtggctaaagagtcacatgatccagatatggaattcgtgggctttatggattatgccgacgatgctttct |
11682859 |
T |
|
| Q |
214 |
atcacaaaaccaattatgactacaaattgggaaatctgatgaactactatggtatcaaaactgaagcggaaatcctaagtgggaatattatgaaaatgtc |
313 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||| |
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| T |
11682858 |
atcacaaaaccaattatgactacaagttgggaaatctgatggactactatggtatcaaaactgaatcagaaatcattagtgggaatattatgaaaatgtc |
11682759 |
T |
|
| Q |
314 |
gaaatctttcacc |
326 |
Q |
| |
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||||||||||||| |
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| T |
11682758 |
gaaatctttcacc |
11682746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 14 - 326
Target Start/End: Original strand, 11639832 - 11640144
Alignment:
| Q |
14 |
agaatatccagatttcatggagaagcctgacaaacctacctgcaaatcaaagaatgtgattggaaaactttttcgggaaattcaaagtatttcaacaaag |
113 |
Q |
| |
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||||||||||||||||||||||||| |||||||| | || | ||||||| | ||||| || |||||||| ||| ||||||||||| | |||||||||||| |
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| T |
11639832 |
agaatatccagatttcatggagaaggctgacaaaacaacatacaaatcagataatgtaataggaaaactgtttagggaaattcaaggaatttcaacaaag |
11639931 |
T |
|
| Q |
114 |
gacggctctgttacatccttcacgttggaagtggctaaagagtcctatgatttgggcatggaattcgacggatttatggattatgttgacaatgccttct |
213 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||| |||| |||||| | ||||||| | || ||||||||||||||||| || ||||||||| |
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| T |
11639932 |
gacggctccattacatccttcacactggaagtggctaaaaagtcatatgatcccgacatggaagttgatggatttatggattatgtcgatgatgccttct |
11640031 |
T |
|
| Q |
214 |
atcacaaaaccaattatgactacaaattgggaaatctgatgaactactatggtatcaaaactgaagcggaaatcctaagtgggaatattatgaaaatgtc |
313 |
Q |
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| ||||| |||||||||| | || ||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| | |
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| T |
11640032 |
actacaaatccaattatgatgagaagttgggaaatctgatggactactatggtatcaaaactgaatcagaaatcctcagtgggaatattatgaaaatggc |
11640131 |
T |
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| Q |
314 |
gaaatctttcacc |
326 |
Q |
| |
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|||||||||||| |
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| T |
11640132 |
taaatctttcacc |
11640144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 11675218 - 11675126
Alignment:
| Q |
325 |
ccctaaggaaagaggcgaggagttggttcgatgacggcggggctgatgtagattctgggagcgatgatgcttatgcaaaagcttctgcttggt |
417 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
11675218 |
ccctaaggaaagaggcgaggagttggttcaatgacggtgcggctgatgtagatgctgggagtgatgatgcttatgcaaaagcttctgcttggt |
11675126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 325 - 417
Target Start/End: Original strand, 11631423 - 11631515
Alignment:
| Q |
325 |
ccctaaggaaagaggcgaggagttggttcgatgacggcggggctgatgtagattctgggagcgatgatgcttatgcaaaagcttctgcttggt |
417 |
Q |
| |
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|||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
11631423 |
ccctaaggaaagaggcaaggagttggttcactgacagcggggctggtgtagattctgggagtgatgatgcatatgcaaaagcttctgcttggt |
11631515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 11683155 - 11683060
Alignment:
| Q |
14 |
agaatatccagatttcatggagaagcctgacaaacctacctgcaaatcaaagaatgtgattggaaaactttttcgggaaattcaaagtatttcaac |
109 |
Q |
| |
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|||||||||||| |||||||| |||||||||||| | |||| ||||||||||||||| || |||||||||||| ||||||||||| |||||||||| |
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| T |
11683155 |
agaatatccagacttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaac |
11683060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 417
Target Start/End: Original strand, 11640185 - 11640277
Alignment:
| Q |
325 |
ccctaaggaaagaggcgaggagttggttcgatgacggcggggctgatgtagattctgggagcgatgatgcttatgcaaaagcttctgcttggt |
417 |
Q |
| |
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||||||| ||||||||||||||||||||| |||| ||| | || ||| |||||||| || |||||||| |||||||||||||||||||||| |
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| T |
11640185 |
ccctaagaaaagaggcgaggagttggttcaatgatggcagtgccagtgttgattctggaagtgatgatgcatatgcaaaagcttctgcttggt |
11640277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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