View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12762_low_1 (Length: 665)
Name: NF12762_low_1
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 645; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 3 - 655
Target Start/End: Complemental strand, 3537382 - 3536730
Alignment:
| Q |
3 |
gctctcacaatcgtcaaatccacatcaaaagagtcactaattgatgatgtaactgaatggaggccattccatcagattttctaggtcaacggccaatcaa |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3537382 |
gctctcacaatcgtcaaatccacatcaaaagagtcactaattgatgatgtaactgaatggaggccattccatcagattttctaggtcaacggccaatcaa |
3537283 |
T |
|
| Q |
103 |
tcttatgtccatagttcaatagtggcatgcagattaaaccaaaggagttaacagtggctttccaaggaaatgagcctccaagtttccaagaagaaggtcg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3537282 |
tcttatgtccatagttcaatagtggcatgcagattaaaccaaaggagttaacagtggctttccaaggaaatgagcctccaagtttccaagaagaaggtcg |
3537183 |
T |
|
| Q |
203 |
gccatggcagcccgagtttctaccgtgccgcttccgatatgaggcaataagacaacattttctagcccaaatagttcttcgggaacatgaggctcgtttt |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3537182 |
gccatggcagcccgagtttctaccgtgccgcttccaatatgaggcaataagacaacattttctagcccaaatagttcttcgggaacatgaggctcgtttt |
3537083 |
T |
|
| Q |
303 |
catacacatcaagtccagcaccacccaaacgaccttcaagcaatgcagagacgagctctggctcatcaacatgcttacctcggccaatgttaattaggac |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3537082 |
catacacatcaagtccagcaccacccaaacgaccttcaagcaatgcagagacgagctctggctcatcaacatgcttacctcggccaatgttaattaggac |
3536983 |
T |
|
| Q |
403 |
acccttcggaccaagtgcattaatgacctcccggttgatgatgtgatgagtttcctctgtaagagggcaggcaacaaccagtatgtcgcagttggatgct |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3536982 |
acccttcggaccaagtgcattaatgacctcccggttgatgatgtgatgagtttcctctgtaagagggcaggcaacaaccagtatgtcgcagttggatgct |
3536883 |
T |
|
| Q |
503 |
aactcaataaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttggcaa |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3536882 |
aactcaataaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttggcaa |
3536783 |
T |
|
| Q |
603 |
ctgctgtgccaatccttcccattccaataatgccaatggttttcccagtgaac |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3536782 |
ctgctgtgccaatccttcccattccaataatgccaatggttttcccagagaac |
3536730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 112 - 655
Target Start/End: Original strand, 3519137 - 3519680
Alignment:
| Q |
112 |
catagttcaatagtggcatgcagattaaaccaaaggagttaacagtggctttccaaggaaatgagcctccaagtttccaagaagaaggtcggccatggca |
211 |
Q |
| |
|
||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
3519137 |
catagttcaatagagtcatgtagattaaaccaagggagttaacagtggctttccaaggaaatgagcctccaagtttccaagaacaaggtcggccatggca |
3519236 |
T |
|
| Q |
212 |
gcccgagtttctaccgtgccgcttccgatatgaggcaataagacaacattttctagcccaaatagttcttcgggaacatgaggctcgttttcatacacat |
311 |
Q |
| |
|
| | ||||||||||||||| ||||| | |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
3519237 |
gttctagtttctaccgtgccacttccaacatgaggcagcaacacaacattttctagcccaaatagctcttcgggaacatgaggctcgttttcaaacacat |
3519336 |
T |
|
| Q |
312 |
caagtccagcaccacccaaacgaccttcaagcaatgcagagacgagctctggctcatcaacatgcttacctcggccaatgttaattaggacacccttcgg |
411 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |
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|
| T |
3519337 |
caagtccagctccacccaaacgaccttcaagcagtgcagagaccagctctggctcatcaacatgcttacctcgaccgatgttaattaggaaacccttcgg |
3519436 |
T |
|
| Q |
412 |
accaagtgcattaatgacctcccggttgatgatgtgatgagtttcctctgtaagagggcaggcaacaaccagtatgtcgcagttggatgctaactcaata |
511 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||| || |||||||||||||||||||||||||||| | |
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|
| T |
3519437 |
accaagtgcattgatgacctcccggttgatgatgtgatgggtttcatctgtaagagagcaggcaacgactagtatgtcgcagttggatgctaactcaaca |
3519536 |
T |
|
| Q |
512 |
aggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttggcaactgctgtgc |
611 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
3519537 |
acatttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttcgcaattgctgtgc |
3519636 |
T |
|
| Q |
612 |
caatccttcccattccaataatgccaatggttttcccagtgaac |
655 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||| |||| |
|
|
| T |
3519637 |
caatccttcccagcccaataatgccaaccgttttaccagagaac |
3519680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 23 - 655
Target Start/End: Original strand, 3479446 - 3480072
Alignment:
| Q |
23 |
cacatcaaaagagtcactaattgatgatgtaactgaatggaggccattccatcagattttctaggtcaacggccaatcaatcttatgtccatagttcaat |
122 |
Q |
| |
|
||||||| | || ||| ||||||||||||||| |||||||||||| ||||| ||| ||| ||||| ||| |||||||||||||| |||||||||| |
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|
| T |
3479446 |
cacatcacaggaatcattaattgatgatgtaa----atggaggccatttcatcaaatt--ctacgtcaatggctaatcaatcttatgtagatagttcaat |
3479539 |
T |
|
| Q |
123 |
agtggcatgcagattaaaccaaaggagttaacagtggctttccaaggaaatgagcctccaagtttccaagaagaaggtcggccatggcagcccgagtttc |
222 |
Q |
| |
|
|| |||||| | |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||||| |||||||| |
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|
| T |
3479540 |
agaggcatgtaaattaaaccaagggagttaacagtggttttccaaggaaatgggcctccaagtttccaagaacaaggtcagccatggcagttcgagtttc |
3479639 |
T |
|
| Q |
223 |
taccgtgccgcttccgatatgaggcaataagacaacattttctagcccaaatagttcttcgggaacatgaggctcgttttcatacacatcaagtccagca |
322 |
Q |
| |
|
|| |||||| ||||| ||||||||| |||||||||||||||||| || ||| ||||| ||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
3479640 |
tatcgtgccacttccacaatgaggcaacaagacaacattttctagcgaaagtagctcttcaggaacatgaggctcgttttcaaacacatcgagtccagct |
3479739 |
T |
|
| Q |
323 |
ccacccaaacgaccttcaagcaatgcagagacgagctctggctcatcaacatgcttacctcggccaatgttaattaggacacccttcggaccaagtgcat |
422 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||||||| |
|
|
| T |
3479740 |
ccacccaaacgaccttcaaggagtgcagagaccagctctggctcatcaacatgcttacctcggccgatgttaataaggaaacctttcggaccaagtgcat |
3479839 |
T |
|
| Q |
423 |
taatgacctcccggttgatgatgtgatgagtttcctctgtaagagggcaggcaacaaccagtatgtcgcagttggatgctaactcaataaggcttggata |
522 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||| || ||||||| |
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|
| T |
3479840 |
tgatgacctcccggttgatgatgtgatgggtttcctctgtaagtgagcaggcaacaactagtatgtcgcagttggatgctaactcaacaacatttggata |
3479939 |
T |
|
| Q |
523 |
gtacttgtattttggttcctgcttttgagttctagaatagtaacatattgaacaattaaaaccttcagctctcttggcaactgctgtgccaatccttccc |
622 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
3479940 |
gtacttgtattttgactcctgcttttgagttctagaatagtagcatattgaacaattaaaaccttcagctctcttggcaattgctgtgccaatcctgccc |
3480039 |
T |
|
| Q |
623 |
attccaataatgccaatggttttcccagtgaac |
655 |
Q |
| |
|
| |||| |||||||| ||||||||||| |||| |
|
|
| T |
3480040 |
agcccaacaatgccaacggttttcccagagaac |
3480072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 72 - 655
Target Start/End: Original strand, 3522645 - 3523228
Alignment:
| Q |
72 |
catcagattttctaggtcaacggccaatcaatcttatgtccatagttcaatagtggcatgcagattaaaccaaaggagttaacagtggctttccaaggaa |
171 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||| ||||||||||||||||||| | |||| || ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3522645 |
catcaaattttctgggtcaatggccaatcaatcatatgtccatagttcaatagagtcatgaagcttaaaccaagggagttaacagtggctttccaaggaa |
3522744 |
T |
|
| Q |
172 |
atgagcctccaagtttccaagaagaaggtcggccatggcagcccgagtttctaccgtgccgcttccgatatgaggcaataagacaacattttctagccca |
271 |
Q |
| |
|
||||||||| | ||||||||| | |||||| |||||||||| |||||||| |||||| ||||||| | ||||||||| | ||||||||||| |||||| |
|
|
| T |
3522745 |
atgagcctctaggtttccaagcacaaggtcagccatggcagttcgagtttcaaccgtggcgcttccaacatgaggcaacagtacaacattttcaagccca |
3522844 |
T |
|
| Q |
272 |
aatagttcttcgggaacatgaggctcgttttcatacacatcaagtccagcaccacccaaacgaccttcaagcaatgcagagacgagctctggctcatcaa |
371 |
Q |
| |
|
||||| || || ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
3522845 |
aatagctcctcaggaacatgaggctcgttttcaaacacatcaagtccagctccacccaaacgaccttcaagcagtgcagagaccagctctggctcatcaa |
3522944 |
T |
|
| Q |
372 |
catgcttacctcggccaatgttaattaggacacccttcggaccaagtgcattaatgacctcccggttgatgatgtgatgagtttcctctgtaagagggca |
471 |
Q |
| |
|
||||||||||||| || ||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
3522945 |
catgcttacctcgaccgatgttaattaggaaaccctttggaccgagtgcgttaatgacctcccggttgatgatgtgatgggtttcctctgtaagggggca |
3523044 |
T |
|
| Q |
472 |
ggcaacaaccagtatgtcgcagttggatgctaactcaataaggcttggatagtacttgtattttggttcctgcttttgagttctagaatagtaacatatt |
571 |
Q |
| |
|
||||||||| ||||| || ||||||||||| | ||||| || |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
3523045 |
ggcaacaactagtatatcacagttggatgcaagctcaacaacacttggatagtacttgtattttgactcctgcttttgagttctcgaatagtaggatatt |
3523144 |
T |
|
| Q |
572 |
gaacaattaaaaccttcagctctcttggcaactgctgtgccaatccttcccattccaataatgccaatggttttcccagtgaac |
655 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||||| | |||||||||| |||| |
|
|
| T |
3523145 |
ggacagttaaagccttcagctctcttggcaatggctgcgccaatccttcccagcccaataatgccgacagttttcccagagaac |
3523228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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