View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_11 (Length: 351)
Name: NF12762_low_11
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 47386062 - 47386408
Alignment:
| Q |
1 |
actagaagaagttgttgcatgtgagaagatgaaaagtagtgacgcaagaatggaaaagtatgagtgggcaagaaggtgcaaagaaggtggtgaaaatgaa |
100 |
Q |
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| T |
47386062 |
actagaggaagttgttgcatgtgagaagatgaaaagtagtgacgcaagaatggaaaagtatgagtgggcaagaaggtgcaaagaaggtggtgaaaatgaa |
47386161 |
T |
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| Q |
101 |
aacaaagaatttttaaattggggtgaagccctttgggtggcagtggctactacttcctaaaactatttatattttcagttctatttatatatgtattaat |
200 |
Q |
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| T |
47386162 |
aacaaagaatttttaaattggggtgaatccctttgggtggcagtggctactacttcctaaaactatttatattttcagttctatttatatatgtattaat |
47386261 |
T |
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| Q |
201 |
--aaaatacaagatttaaata---------tttttgtgcgtgcattcatcttgttttgtttaatgaatttcccgtgtttgtctcataaactatagtcttg |
289 |
Q |
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| T |
47386262 |
aaaaaatacaagatttaaatatttttgtcctttttgtgcgtgcattcatcttgttttgtttaatgaatttcccgtgtttgtatcataaactatagtcttg |
47386361 |
T |
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| Q |
290 |
tcggtagttattatcgttac-----tttgttccaagaaggacacacg |
331 |
Q |
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| T |
47386362 |
tcggtagttattatcgttactttaatttgttccaagaaggacacacg |
47386408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 269
Target Start/End: Complemental strand, 47372820 - 47372630
Alignment:
| Q |
78 |
gcaaagaaggtggtgaaaatgaaaacaaagaatttttaaattggggtgaagcc-----ctttgggtggcagtggctactacttcctaaaactatttatat |
172 |
Q |
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| T |
47372820 |
gcaaagaaggtggtgaaaatgaaaacaatgaatcgttaaattggggtgagaacgtgaacttttgg-----gtggctactacttcctaaaactatttatat |
47372726 |
T |
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| Q |
173 |
tttcagttctatttatatatgtattaataaaatacaagatt-taaatatttttgtgcgtgcattcatcttgttttgtttaatgaatttcccgtgtttg |
269 |
Q |
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| T |
47372725 |
tttcccatctatt--tatctgtattaataaaaaacaagattatgtatttgtttttttgtgcattcaacctgctttgtttaatgaatttcccgtgtttg |
47372630 |
T |
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