View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_12 (Length: 340)
Name: NF12762_low_12
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 26608471 - 26608782
Alignment:
| Q |
17 |
aaaagagtgttgctatcagtacttttatataatacttgtaacaccgtaaactctaagagaaatgataacaacgtatattttaacatacactttttaattg |
116 |
Q |
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|||| |||||||| |||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| || |
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| T |
26608471 |
aaaatagtgttgcgatcactactcttatata-tacttgtaacaccgtaaaccctaagagaaatgataacaacgcatattttaacatacaatttttattta |
26608569 |
T |
|
| Q |
117 |
gagagagtgtgttgaaaaatgtatggtaaaatatgtgttgttaacatttctcaaaccctaattcatcaaaaagtaatatgtaaaactatatcactatata |
216 |
Q |
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||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26608570 |
aagagagtatgttgaaaaatgtgtgataaaatatgtgttgctaacatttctcaaaccctaattcatcaaaaagtaatatgcaaaactatatcactatata |
26608669 |
T |
|
| Q |
217 |
atcgtagtggtagatacaataattggccaaactgtgtaaacaaaaattgcatttcattgtcttacgatttttcttttcttctatcaccattgctattcta |
316 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26608670 |
atcgtagtggtag--acaataattggcgaaactgtgtaaacaaaaattgcatttcattgtcttacgatttttcttttcttttatcaccattgctattcta |
26608767 |
T |
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| Q |
317 |
actagttgttcttct |
331 |
Q |
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||||||||||||||| |
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| T |
26608768 |
actagttgttcttct |
26608782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 41169504 - 41169554
Alignment:
| Q |
118 |
agagagtgtgttgaaaaatgtatggtaaaatatgtgttgttaacatttctc |
168 |
Q |
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| T |
41169504 |
agagagtgtgttgaaaaatgtgtgttaaaatatgtgttactagcatttctc |
41169554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 4033012 - 4032959
Alignment:
| Q |
118 |
agagagtgtgttgaaaaatgt--atggtaaaatatgtgttgttaacatttctca |
169 |
Q |
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| T |
4033012 |
agagagtgtgttgaaaaatgtttatgttaaaatatgtgttgctaacatttctca |
4032959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 24110088 - 24110039
Alignment:
| Q |
118 |
agagagtgtgttgaaaaatgtatggtaaaatatgtgttgttaacatttct |
167 |
Q |
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| T |
24110088 |
agagagtgtgttgaaaaatgtattttagaatatgtgttgctagcatttct |
24110039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 43884499 - 43884545
Alignment:
| Q |
118 |
agagagtgtgttgaaaaatgtatggtaaaatatgtgttgttaacatt |
164 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||| |||| |
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| T |
43884499 |
agagagtgtgttaaaaaatgtatgttaaaatatgtgttgttagcatt |
43884545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 45300389 - 45300341
Alignment:
| Q |
121 |
gagtgtgttgaaaaatgtatggtaaaatatgtgttgttaacatttctca |
169 |
Q |
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|||||||||||||||||| || || || ||||||||||||||||||||| |
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| T |
45300389 |
gagtgtgttgaaaaatgtgtgttagaagatgtgttgttaacatttctca |
45300341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 25666912 - 25666962
Alignment:
| Q |
118 |
agagagtgtgttgaaaaatgtatggtaaaatatgtgttgttaacatttctc |
168 |
Q |
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||||||||||||||||| |||||| |||||| ||||||| || |||||||| |
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| T |
25666912 |
agagagtgtgttgaaaattgtatgttaaaatgtgtgttgctagcatttctc |
25666962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 14345172 - 14345126
Alignment:
| Q |
122 |
agtgtgttgaaaaatgtatggtaaaatatgtgttgttaacatttctc |
168 |
Q |
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||||||||||||||| | || |||||||||||||| ||||||||||| |
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| T |
14345172 |
agtgtgttgaaaaatatgtgttaaaatatgtgttgctaacatttctc |
14345126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 13772412 - 13772376
Alignment:
| Q |
128 |
ttgaaaaatgtatggtaaaatatgtgttgttaacatt |
164 |
Q |
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| T |
13772412 |
ttgaaaaatgtatgttaaaatatgtgttgttagcatt |
13772376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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