View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_13 (Length: 318)
Name: NF12762_low_13
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 44587394 - 44587105
Alignment:
| Q |
18 |
cccacatttgtgaaaacacataagctactatatctagcttctgtgatagaacaaacatattgtaagttgaagaaagtgtttaacttttttggtggtcatg |
117 |
Q |
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| T |
44587394 |
cccacgtttgtgaaaacacataagctactatatctagcttctgtgatagaacaaacatcttgtaagttgaagaaagtgtttaacttttttggtggtcatg |
44587295 |
T |
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| Q |
118 |
atactttcctcccagcctcccaacccaaacccgacattctttaaaagatatcatcacaacacaaataaatctacaagataatatgtttccaaaacaaaag |
217 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
44587294 |
atactttcctcccatcctcctaacccaaacccgacattctttaaaagatatcatgacaacacaaataaatctacacgataatatgtttacaaaacaaaag |
44587195 |
T |
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| Q |
218 |
tgttacactacagtatgtttaggnnnnnnngtatcaaaacataaataagttgatgctacaacaagtttcttccaacacaaagtgcttcat |
307 |
Q |
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|||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44587194 |
tgttacactacaatatgtttcggaaaaaaagtatcaaaacataaataaattgatgctacaacaagtttcttccaacacaaagtgcttcat |
44587105 |
T |
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