View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_15 (Length: 282)
Name: NF12762_low_15
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 32812453 - 32812188
Alignment:
| Q |
1 |
catctccatagatgtgtggtgattacattaaaactagtgacacgggcaatactattaacttttgctttttccttcagtttgttgatatttttagaggtta |
100 |
Q |
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| T |
32812453 |
catctccatagatgtgtggtgattacattaaaactagtgacacgggcaatactattaatttttgctttttccttcagtttgttgatatttttagaggtta |
32812354 |
T |
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| Q |
101 |
attgaaaaaccttaaagtcgagttcttctgaggatgcttcaaagacaccagattcattgcctaaaggtagtaggttatcaagcttgatcatctcagggtg |
200 |
Q |
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| T |
32812353 |
attgaaaaaccttaaagtcgagttcttctgaggatgcttcaaagacaccagattcattgcctaaaggtagtaggttatcaagcttgatcatctcagggtg |
32812254 |
T |
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| Q |
201 |
ggggaaatcgacatgtggagggaatcgtgcggctaagagttgtctgtcattgaagggtgtcataat |
266 |
Q |
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| T |
32812253 |
ggggaaatcgacatgtggaggggatcgtgcggctaagagttgtctgtcattgaagggtgtcataat |
32812188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 53 - 261
Target Start/End: Complemental strand, 32829931 - 32829726
Alignment:
| Q |
53 |
tattaacttttgctttttccttcagtttgttgatatttttagaggttaattgaaaaaccttaaagtcgagttcttctgaggatgcttcaaagacaccaga |
152 |
Q |
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| T |
32829931 |
tattaccttttgccttttccttaaggttgttgatgtcttcatatgtcagttgaaaaaccatgaagtcaaattcttctgaggatgcttcaaagacaccaga |
32829832 |
T |
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| Q |
153 |
ttcattgcctaaaggtagtaggttatcaagcttgatcatctcagggtgggggaaatcgacatgtggagggaatcgtgcggctaagagttgtctgtcattg |
252 |
Q |
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| T |
32829831 |
tttaatgcctaaaggtaga---ttatcgagcttgatcatctcagggtgggggaagtttacatgtggaggagatcgtgcagctaggagttgtctgtcatgg |
32829735 |
T |
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| Q |
253 |
aagggtgtc |
261 |
Q |
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| T |
32829734 |
aagggtgtc |
32829726 |
T |
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