View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_16 (Length: 269)
Name: NF12762_low_16
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 52433325 - 52433563
Alignment:
| Q |
18 |
gaacaaagtctcatcaacttttcaagaggcttcatatcatggacttaacatagcaagaacatgggctttcagtgatggtggttataaaccccttcaatac |
117 |
Q |
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| T |
52433325 |
gaacaaagtctcatcaacttttcaagaggcttcatatcatggacttaacatagcaagaacatgggctttcagtgatggtggttataaaccccttcaatac |
52433424 |
T |
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| Q |
118 |
tctcctggatcctacaatgaggaaatgttccaggtttactatatatttaatttactgctcaaccttcaccatttccattttttcaatcataaatttatat |
217 |
Q |
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| T |
52433425 |
tctcctggatcctacaatgaggaaatgttccaggtttactatatatttaatttactgttcaaccttcaccatttccattttctcaatcataaatttatat |
52433524 |
T |
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| Q |
218 |
atgcactaaaaatttgatataattgtttatatctgtgct |
256 |
Q |
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| T |
52433525 |
atgcaccaaaaatttgatataattgtttatatttgtgct |
52433563 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 8010674 - 8010747
Alignment:
| Q |
73 |
agaacatgggctttcagtgatggtggttataaaccccttcaatactctcctggatcctacaatgaggaaatgtt |
146 |
Q |
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| T |
8010674 |
agaacttgggctttcagtgatggtggttatagtcctttgcaatattctcctggcttctacaatgaacaaatgtt |
8010747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 38086031 - 38085978
Alignment:
| Q |
72 |
aagaacatgggctttcagtgatggtggttataaaccccttcaatactctcctgg |
125 |
Q |
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| T |
38086031 |
aagaacatgggctttcaatgatggaggttataaagctcttcaaatctctcctgg |
38085978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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