View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_17 (Length: 240)
Name: NF12762_low_17
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 616846 - 616627
Alignment:
| Q |
1 |
ttgatgtttaaccgatctaaagttagaaccgtctctcttacctttttcctacaaataacattaccacttttatttgtatagtagagaagcatatgaaaac |
100 |
Q |
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| T |
616846 |
ttgatgtttaaccgatctaaagttagaaccgtctctcttacctttttcctacaaataacattaccacttttatttgtatagtaga--agcatatgaaaac |
616749 |
T |
|
| Q |
101 |
atcaaaagtaggtccaaatttatggttttataaattataaaccatgtcttatattacatataagctaaaaagtatgtgtatatcttatcgacgacatgta |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
616748 |
atcaaaagtaggtctaaatttatggttttataaattataaaccatgtcttatattacatataagctaaaaagtatatgtatatcttatcgacgacacgta |
616649 |
T |
|
| Q |
201 |
cttttttgcttatatttaagtt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
616648 |
cttttttgcttatatttaagtt |
616627 |
T |
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