View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_2 (Length: 577)
Name: NF12762_low_2
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_2 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold1657 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Complemental strand, 73069 - 72504
Alignment:
| Q |
1 |
atggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttggatgtgtaaaaatgggagggttacgataattcgtaaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
73069 |
atggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttggatgtgtaaaaatgggagggttacgataattcgtaaaatg |
72970 |
T |
|
| Q |
101 |
cgagtaaatcggttttagaattttaagataaaatgagatcatgtattttgaattctctctattgttcgttgttcagtaaattgcacttatcatctacaat |
200 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |
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| T |
72969 |
cgagtaaattggttttagaatttcaagataaaatgagatcatgtcttttgaattctct--attgctcgttgttcaataaattgcacttatcatctacaat |
72872 |
T |
|
| Q |
201 |
tattctcctagattcacgatgaattaataaatcgttctgatcaatctcttgactcataatcctcttcttataaggttacaatccatttaggtgaatttgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
72871 |
tattctcctagattcacgatgaattaataaatcgttcagatcaatctcttgactcggaatcctcttct---aaggttacaatccatttaggtgaatttgt |
72775 |
T |
|
| Q |
301 |
aacagttgaagggtttactagaacgttaattcttagatcataacctagcaatcatctatctctagtctgacccgttaattaaattaaccagaaatattag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
72774 |
aacagttgaagggtttactagaacgttaattcttagatcataacctaacaatcatctatctctagtctgacccattaattaaattaaccagaaatattag |
72675 |
T |
|
| Q |
401 |
gtctaattcgatagttatagctagtagtcaattg--atgtagatttttgtgcatatttgatcaagatataaaaagaattacacacaattaattatgaata |
498 |
Q |
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|||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||||| |
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| T |
72674 |
gtctaattcgatagttatggctagtagtcaattgatatttagatttttctgcatatttgatcaagatataaaaagaactacacataattaattaggaata |
72575 |
T |
|
| Q |
499 |
aaactaggatagcaattgtattaaatcaagtttatacaatcacatgtttcaaacatcaatcgattcatctc |
569 |
Q |
| |
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| T |
72574 |
aaactaggatagcaattgtattaaatcgagtttatacaatcacatgtttcaaatatcaatcgattcatctc |
72504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 569
Target Start/End: Original strand, 8437898 - 8438463
Alignment:
| Q |
1 |
atggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttggatgtgtaaaaatgggagggttacgataattcgtaaaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8437898 |
atggattacagtcctaaagcttttccatagtagcctattccctttgacattatcatgttggatgtgtaaaaatgggagggttacgataatttgtaaaatg |
8437997 |
T |
|
| Q |
101 |
cgagtaaatcggttttagaattttaagataaaatgagatcatgtattttgaattctctctattgttcgttgttcagtaaattgcacttatcatctacaat |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| | |||||||| |||||||||||||||||||||||||| |
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| T |
8437998 |
cgagtaaatcggttttagaatttcaagataaaatgagatcatgtcttctgaat--tctctatagctcgttgtttagtaaattgcacttatcatctacaat |
8438095 |
T |
|
| Q |
201 |
tattctcctagattcacgatgaattaataaatcgttctgatcaatctcttgactcataatcctcttcttataaggttacaatccatttaggtgaatttgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||| ||||||||| |||||| ||||||||| |
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| T |
8438096 |
tattctcctagattcacgatgaattaataaatcgttctgataaatctcttgactcagaatcctcttc---taatgttacaatctatttagatgaatttgt |
8438192 |
T |
|
| Q |
301 |
aacagttgaagggtttactagaacgttaattcttagatcataacctagcaatcatctatctctagtctgacccgttaattaaattaaccagaaatattag |
400 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8438193 |
aacagttgaaaggtttactagaacgttaattcttagatcataacctaacaatcatctatctctagtttgacccgttaattaaattaaccagaaatattag |
8438292 |
T |
|
| Q |
401 |
gtctaattcgatagttatagctagtagtcaattg--atgtagatttttgtgcatatttgatcaagatataaaaagaattacacacaattaattatgaata |
498 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8438293 |
gtctaatttgatagttatggctagtagtcaattgatatttatatttttgtgcatatttgatcaagatataaaaagaattacacacaattaattatgaata |
8438392 |
T |
|
| Q |
499 |
aaactaggatagcaattgtattaaatcaagtttatacaatcacatgtttcaaacatcaatcgattcatctc |
569 |
Q |
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| T |
8438393 |
aaactaggatagcaattgtattaaatcgagtttatacaatcacatgtttcaaacatcaatcgattcatctc |
8438463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 553
Target Start/End: Original strand, 26157075 - 26157172
Alignment:
| Q |
451 |
atatttgatcaagatataaaaagaattacacacaattaattatgaataaaactaggatagcaattgtattaaatcaagtttatacaatcacatgtttcaa |
550 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||| ||||| | |||||||||||| ||||||||||||| |||||||||||||||||| ||||| |
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| T |
26157075 |
atatgtgatcaagatataaaaagcattacacgcaaataattct-----aaactaggatagtaattgtattaaatatagtttatacaatcacatggttcaa |
26157169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1657 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1657
Description:
Target: scaffold1657; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 417
Target Start/End: Original strand, 609 - 702
Alignment:
| Q |
320 |
agaacgttaattcttagatcataacctagcaatcatctatctctagtctgacccgttaattaaattaaccagaaatattaggtctaattcgatagtta |
417 |
Q |
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|||||||||||| || |||||||||| |||||||||||| |||| ||||||||||| ||||||||||| |||||| || ||||| ||||||| |
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| T |
609 |
agaacgttaatttctatgtcataacctaacaatcatctatccctagactgacccgttag----attaaccagaattattagatccaattcaatagtta |
702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 21599331 - 21599282
Alignment:
| Q |
450 |
catatttgatcaagatataaaaagaattacacacaattaattatgaataa |
499 |
Q |
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||||||||||||||||| |||||| |||| |||||| ||||| ||||||| |
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| T |
21599331 |
catatttgatcaagatacaaaaagcattaaacacaagtaattttgaataa |
21599282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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