View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_4 (Length: 460)
Name: NF12762_low_4
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 43096005 - 43095574
Alignment:
| Q |
19 |
ccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagttata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43096005 |
ccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagttata |
43095906 |
T |
|
| Q |
119 |
tgttattatccatataaaactatttcatgtttgcttatcataaatcttataggaataaattatatgtattgtaagtgtaatcataactcgccatttacat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43095905 |
tgttattatccatataaaactatttcatgtttgcttatcataaatcttaaaggaataaattatatgtattgtaagtgtaatcataactcgccatttacat |
43095806 |
T |
|
| Q |
219 |
aattgtttttagttaaaaaactgtaaagtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaattataacttttctcatttgtattgaa |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43095805 |
aattgtttttagttaaaaaaccgtaaagtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaattataacttttctcatttgtattgaa |
43095706 |
T |
|
| Q |
319 |
attcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttctcatagcagcaatttgtct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43095705 |
attcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttctcatagcagcaatttgtct |
43095606 |
T |
|
| Q |
419 |
attcaacaatcttgcttggatttgctcctttg |
450 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
43095605 |
attcaacaatcttgcttggatttgctcctttg |
43095574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 44187798 - 44187960
Alignment:
| Q |
19 |
ccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagttata |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44187798 |
ccaattccatctccaatggggattgtttggatccataattgtggcatctgtaggttttgaagagttcctccatgtttgctgttagagaaattaagctata |
44187897 |
T |
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| Q |
119 |
tgttattatccatataaaactatttcatgtttgcttatcataaatcttataggaataaattata |
182 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||| |||| | |||||||||||| |
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| T |
44187898 |
ggttattatccatat-aaactatttcatgtttgcttatgataaaccttaaatgaataaattata |
44187960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 301 - 441
Target Start/End: Original strand, 6094520 - 6094660
Alignment:
| Q |
301 |
tttctcatttgtattgaaattcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttct |
400 |
Q |
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|||||||||||| ||||||| || ||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6094520 |
tttctcatttgttttgaaatccaacattactaaaaaactacgaaaagaggtatgctagtacctgatgtgttgatgcataagccaaagcattttctcttct |
6094619 |
T |
|
| Q |
401 |
catagcagcaatttgtctattcaacaatcttgcttggattt |
441 |
Q |
| |
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|||||||||||||||||| |||||||| |||||||||||| |
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| T |
6094620 |
catagcagcaatttgtctggtcaacaattttgcttggattt |
6094660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 301 - 450
Target Start/End: Original strand, 44188359 - 44188508
Alignment:
| Q |
301 |
tttctcatttgtattgaaattcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttct |
400 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |||| |
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| T |
44188359 |
tttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatgtattgatgcataaatcaaagcctattcacttcg |
44188458 |
T |
|
| Q |
401 |
catagcagcaatttgtctattcaacaatcttgcttggatttgctcctttg |
450 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
44188459 |
catagcagcaatttgtctgttcaacaattttgcttggatttgctcctttg |
44188508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 44188009 - 44188074
Alignment:
| Q |
227 |
ttagttaaaaaactgtaaagtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaat |
293 |
Q |
| |
|
||||||||||| | ||||| || |||||||| ||||||||||||| ||| |||||||||||||||| |
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| T |
44188009 |
ttagttaaaaatc-gtaaaatatgatgtagcgaattgaagagttgcaattgaatgttagtgtaaaat |
44188074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 34003608 - 34003664
Alignment:
| Q |
215 |
acataattgtttttagttaaaaaactgtaaagtacgatgtagcaaattgaagagttg |
271 |
Q |
| |
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|||||||| |||||| || ||||||||| || || ||||| |||||||||||||||| |
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|
| T |
34003608 |
acataattatttttaatttaaaaactgtcaaatatgatgtggcaaattgaagagttg |
34003664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 32726926 - 32727093
Alignment:
| Q |
19 |
ccaattccatccccaatggggattgtttggatccataattgtggcatctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagttata |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
32726926 |
ccaattccatctccaatggggattgtttggatccataactgtagcatctgtaggttttgaagggttcctccatgtttgctgttagagaaattaagctata |
32727025 |
T |
|
| Q |
119 |
tgttattatccatataaaactatttcatgtttgcttatcataaatcttataggaataaattatatgtat |
187 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| |||| | |||||||||||| |||| |
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| T |
32727026 |
ggttattatccatat-aaactatttcatgtttgcttatgataaaccttaaatgaataaattataagtat |
32727093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 301 - 450
Target Start/End: Original strand, 32727486 - 32727635
Alignment:
| Q |
301 |
tttctcatttgtattgaaattcagcattactaaaatactataaaaagaggtatgttagtacctgatgtgttgatgcataagccaaagccttttctcttct |
400 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| |||| ||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |||| |
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|
| T |
32727486 |
tttctcatttgtattgaaatcctacattactaaaaaactacgaaaagaggtattttagtacctgatgtattgatgcataaatcaaagcctattcacttcg |
32727585 |
T |
|
| Q |
401 |
catagcagcaatttgtctattcaacaatcttgcttggatttgctcctttg |
450 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||||||||||||||||||| |
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|
| T |
32727586 |
catagcagcaatttgtctgttaaacaattttgcttggatttgctcctttg |
32727635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 32727136 - 32727201
Alignment:
| Q |
227 |
ttagttaaaaaactgtaaagtacgatgtagcaaattgaagagttgtgattaaatgttagtgtaaaat |
293 |
Q |
| |
|
||||||||||| | ||||| || |||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
32727136 |
ttagttaaaaatc-gtaaaatatgatgtagcaaattgaagagttgcaattgaatgttagtgtaaaat |
32727201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 13898017 - 13897976
Alignment:
| Q |
235 |
aaaactgtaaagtacgatgtagcaaattgaagagttgtgatt |
276 |
Q |
| |
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||||||||||| || ||||| ||||||||||||||||||||| |
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|
| T |
13898017 |
aaaactgtaaaatatgatgtggcaaattgaagagttgtgatt |
13897976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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