View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_5 (Length: 442)
Name: NF12762_low_5
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 18428664 - 18428243
Alignment:
| Q |
19 |
aagcatattggagttaagaaagctttggtattttacaagggtagaccaccaaagggaatcaagacagattggattatgcatgaatataggttaattggat |
118 |
Q |
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| T |
18428664 |
aagcatattggagttaagaaagctttggtattttacaagggtagaccaccaaagggaatcaagacagattggattatgcatgaatataggttaattggat |
18428565 |
T |
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| Q |
119 |
caagaagacaagctaatagacaaattgggtccatgagggtaagccttttaaccctatatagcttttagaatttcaagatttgttgagtaaatcatttgat |
218 |
Q |
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| T |
18428564 |
caagaagacaagctaatagacaaattgggtccatgagggtaagccttttaaccctatatagcttttagaatttcaagatttgttgaataaatcatttgat |
18428465 |
T |
|
| Q |
219 |
tagtct--------cagtagtcgagcagtttgattttcgaattaaagaaattttaaattagtttataaaattaaaatattcgatcaaataacatttttga |
310 |
Q |
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| T |
18428464 |
tagtcttgaaattgtagtagtcgagcagtttgattttcaaattaaagaaattttaaattagtttataaaattaaaatattcgatcaaataatatttttga |
18428365 |
T |
|
| Q |
311 |
tcggccaatttagtatttaaaattgtcttgtaaaccttatcagatcgaaaatttaaattttaagaaattattttagaattttgttaatttaaagggacgt |
410 |
Q |
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| T |
18428364 |
tcggccaatttagcatctaaaattttcttgtaaaccttgtcagatcgaaaatttaaatttcaagaaatcattttagaattttgttaatttgaagggacgt |
18428265 |
T |
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| Q |
411 |
ctttaattgatattcctctctg |
432 |
Q |
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| T |
18428264 |
ctttaattgatattcctctctg |
18428243 |
T |
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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 31872547 - 31872444
Alignment:
| Q |
17 |
caaagcatattggagttaagaaagctttggtattttacaagggtagaccaccaaagggaatcaagacagattggattatgcatgaatataggttaattgg |
116 |
Q |
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||||||| ||||| || |||||| |||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||| || || || ||||| |
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| T |
31872547 |
caaagcaaattggtgtgaagaaatctttggtattttacaaaggtagaccaccaaagggtgtcaaaactgattggattatgcatgagtacagattgattgg |
31872448 |
T |
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| Q |
117 |
atca |
120 |
Q |
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|||| |
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| T |
31872447 |
atca |
31872444 |
T |
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