View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_7 (Length: 402)
Name: NF12762_low_7
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 36466849 - 36466466
Alignment:
| Q |
1 |
aggttcaacaaattaatacaagacttgaatgatttgaacattgaaatggtagatctcagtgttacaactatggcaggagcatatctcattacagcctcct |
100 |
Q |
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| T |
36466849 |
aggttcaacaaattaatacaagacttgaatgatttgaacattgaaatggtagatctcagtgttacaactatggcaggagcatatctcattacagcctcct |
36466750 |
T |
|
| Q |
101 |
tacaggtgacattataaatttaagataagaaattaatatcataaactcatgttaatacatgttaatatattatttgctttaatttgaaattttgaacaaa |
200 |
Q |
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| T |
36466749 |
tacaggtgacattataaatttaagataagaaattaacatcataaactcatgttaatacatgttaatatattatttgctttaatttgaaattttgaacaaa |
36466650 |
T |
|
| Q |
201 |
tgctagacttttatgttgattctatatttgttatttttcaggacatgagtggtgaaccacttgaactttatcgaattccaactattatcaagtattaggg |
300 |
Q |
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| T |
36466649 |
tgctagacttttatgttgattctatatttgttatttttcaggacatgagtggtgaaccacttgaactttatcgaattccaactattatcaagtattaggg |
36466550 |
T |
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| Q |
301 |
caaatggaaaagctatttcttatgcatcaagtcatcaaattaaaataaggtttagattattttattgctc-attaacttgtatt |
383 |
Q |
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| T |
36466549 |
caaatggaaaagctatttcttatgcatcaagtcatcaaattaaaataaggtttagattattttattgctcaattaacttgtatt |
36466466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 24055849 - 24055748
Alignment:
| Q |
163 |
taatatattatttgctttaatttgaaattttgaacaaatgctagacttttatgttgattctatatttgttatttttcaggacatgagtggtgaaccactt |
262 |
Q |
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| T |
24055849 |
taatatatgatttgctttaatttgaagttttgaagaaatgcaagatttttatgttgattcaatgtttgttactttacagggaatgggaggtgaactactt |
24055750 |
T |
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| Q |
263 |
ga |
264 |
Q |
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|| |
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| T |
24055749 |
ga |
24055748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 36494878 - 36494798
Alignment:
| Q |
162 |
ttaatatattatttgctttaatttgaaattttgaacaaatgctagacttttatgttgattctatatttgttatttttcagg |
242 |
Q |
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||||||||||||||||||| |||| ||| |||||| |||| | || |||||||||||||| || ||| | |||||||||| |
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| T |
36494878 |
ttaatatattatttgctttgattttaaagtttgaataaattcaaggtttttatgttgattcaatgtttttaatttttcagg |
36494798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 36494194 - 36494138
Alignment:
| Q |
208 |
cttttatgttgattctatatttgttatttttcaggacatgagtggtgaaccacttga |
264 |
Q |
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| T |
36494194 |
cttttatgttgattcaatatttgttatttttaagggtatgggtagtcaaccacttga |
36494138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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