View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12762_low_9 (Length: 361)
Name: NF12762_low_9
Description: NF12762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12762_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 31640743 - 31640420
Alignment:
| Q |
1 |
aggctgtatatgtttagaaatttttagaaaaaatggaattatgctgagataaagttgggaggaaatagatggaatagaaaatatttgttttttcacactt |
100 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31640743 |
aggctgtatatgtttagaaatttttagagaaaatgaaattatgctgagatataattgcgaggaaatagatggaatagaaaatatttgttttttcacactt |
31640644 |
T |
|
| Q |
101 |
gccgtcccaagcacgagaaatgaaatcattccacaattgatgtgaaggcattccaaaattgtgttgtagaacctcatttttctctcaaacattagaaatg |
200 |
Q |
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||| ||||||||| |||| ||||| |||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
31640643 |
gccctcccaagcatgagatgagaaat-----------------gaaggcattccacaattgtcttgtagaacctcatttttctatcaaacatgagaaatg |
31640561 |
T |
|
| Q |
201 |
aaatggtatatgtgcccgttaattacgtggttgaaaattctatttcttatggggtaacctatttcctcaaaattttgaaagtgtcattgatgttaaagtg |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31640560 |
aa-tggtatatgtgcccgttaattacgtggttgaaaattctatttcttatggggtaacctatttcctcaaaattttgaaagtgtcattgatgttaaagtg |
31640462 |
T |
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| Q |
301 |
agaaaatgcgtacatcatttatgaaaaaagtcatcttgacta |
342 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31640461 |
ataaaatgcgtacatcatttatgaaaaaagtcatcttgacta |
31640420 |
T |
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