View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12763_high_1 (Length: 300)
Name: NF12763_high_1
Description: NF12763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12763_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 27610389 - 27610655
Alignment:
| Q |
14 |
caacatcagcaaaaatcctgccatgaagaagaaaaaactgatttcacaatgaacacaaaagctcatcaagaaaaacaacatacatttatatttgataaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27610389 |
caacatcagcaaaaatcctgccatgaagaagaaaaaactgatttcacaatgaacacaaaagctcatcaagaaaaacaacatgcatttatatttgataaaa |
27610488 |
T |
|
| Q |
114 |
agttccttttgaagctagctaaccaagttatcaaatgtacaaactacaaacagaagtaagacagaacttgaataaaattaactcttataaaaaagcacat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27610489 |
agttccttttgaagctagctaaccaagttatcaaatgtacaaactacaaacagaagtaagacagaacttgaataaaattaactcttataaaaaagcacat |
27610588 |
T |
|
| Q |
214 |
aagttacatgtttaagctactataaaatgaaggaaagaaagacaagactctcatataatacagaaca |
280 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27610589 |
aagttacatgtttaacctactataaaacgaagtaaagaaagacaagactctcatataatacagaaca |
27610655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University