View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12763_high_1_N (Length: 354)

Name: NF12763_high_1_N
Description: NF12763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12763_high_1_N
NF12763_high_1_N
[»] chr1 (2 HSPs)
chr1 (1-346)||(47386047-47386408)
chr1 (63-254)||(47372630-47372820)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 47386408 - 47386047
Alignment:
Q  1 cgtgtgtccttcttggaacaaa-----gtaacgataataactaccgacaagactatagtttatgagacaaacacgggaaattcattaaacaaaacaagat 95  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47386408 cgtgtgtccttcttggaacaaattaaagtaacgataataactaccgacaagactatagtttatgatacaaacacgggaaattcattaaacaaaacaagat 47386309  T
Q  96 gaatgcacgcacaaaaa---------tatttaaatcttgtatttt--attaatacatatataaatagaactgaaaatataaatagttttaggaagtagta 184  Q
    |||||||||||||||||         |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47386308 gaatgcacgcacaaaaaggacaaaaatatttaaatcttgtattttttattaatacatatataaatagaactgaaaatataaatagttttaggaagtagta 47386209  T
Q  185 gccactgccacccaaagggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgcaccttcttgcccactcatacttttccattc 284  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47386208 gccactgccacccaaagggattcaccccaatttaaaaattctttgttttcattttcaccaccttctttgcaccttcttgcccactcatacttttccattc 47386109  T
Q  285 ttgcgtcactacttttcatcttctcacatgcaacaacttcttctagttccaccttctctgct 346  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47386108 ttgcgtcactacttttcatcttctcacatgcaacaacttcctctagttccaccttctctgct 47386047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 254
Target Start/End: Original strand, 47372630 - 47372820
Alignment:
Q  63 caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat 161  Q
    |||||||||||||||||||||||||| || | |||||||||  | ||| | ||  | |||||||| ||||||||||||| |||  ||||||   ||||||    
T  47372630 caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat 47372727  T
Q  162 ataaatagttttaggaagtagtagccactgccacccaaag-----ggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc 254  Q
    ||||||||||||||||||||||||||||     || ||||     |   ||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  47372728 ataaatagttttaggaagtagtagccac-----ccaaaagttcacgttctcaccccaatttaacgattcattgttttcattttcaccaccttctttgc 47372820  T

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