View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12764_low_1 (Length: 428)
Name: NF12764_low_1
Description: NF12764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12764_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 35814720 - 35814325
Alignment:
| Q |
19 |
cgatgagtgcatcaagacttccccaagcttgcttgagaggacaagcacatggtgcaggtggggtaggttgtccaaagaagatgcaaccttgaaagtgaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35814720 |
cgatgagtgcatcaagacttccccaagcttgcttgagaggacaagcacaaggtgcaggtggggtaggttgtccaaagaagatgcaaccttgaaagtgaac |
35814621 |
T |
|
| Q |
119 |
cttagtcttaccaaattgatcaaggtaacgaagaaaatcaagaacatggttgaagttacagtgtgatagtggaactagtggattttgactcttgagatat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35814620 |
cttagtcttaccaaattgatcaaggtaacgaagaaaatcaagaacatggttgaagttacagtgtgatagtggaactagtggattttgactcttgagatat |
35814521 |
T |
|
| Q |
219 |
tgattaaaggtgttccaatctctacgtttttgagattcatacctgcttagtggttgttgttgctgatgatcatgatgatgattggatttggaagaagatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35814520 |
tgattaaaggtgttccaatctctacgtttttgagattcatacctgcttagtggttgttgttgctga---------tgatgattggatttggaagaagatg |
35814430 |
T |
|
| Q |
319 |
cgtgaagagaagagttttcgatttgggaagaggaagaagacatgttttgtggttgacagggtaaggtgaaagaatgaatgtattgtattggtgttggtgt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35814429 |
ggtgaagagaagagttttcgatttgggaagaggaagaagacatgttttgtggttgacagggtaaggtgaaagaatgaatgtattgtattggtgttggtgt |
35814330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 4863264 - 4863108
Alignment:
| Q |
19 |
cgatgagtgcatcaagacttccccaagcttgcttgagaggacaagcacatggtgcaggtggggtaggttgtccaaagaagatgcaaccttgaaagtgaac |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | | ||||||| ||| ||||| || || |||||||| || ||||||||||| || |||||||| |
|
|
| T |
4863264 |
cgatgagtgcatcaagactcccccaagcttgtctcaacggacaagtacacggtgccggcggatcgggttgtccgaaaaagatgcaaccgtgcaagtgaac |
4863165 |
T |
|
| Q |
119 |
cttagtcttaccaaattgatcaaggtaacgaagaaaatcaagaacatggttgaagtt |
175 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| || ||||| |||||||||||||| |
|
|
| T |
4863164 |
cttagtctttccaaattgatctaagtaacgaaggaactcaagcacatggttgaagtt |
4863108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 32002153 - 32002208
Alignment:
| Q |
24 |
agtgcatcaagacttccccaagcttgcttgagaggacaagcacatggtgcaggtgg |
79 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| ||||||| ||||||| |
|
|
| T |
32002153 |
agtgcatcaagacttccccaagcttgttttagaggacaagtacatggtccaggtgg |
32002208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 30942081 - 30941918
Alignment:
| Q |
36 |
cttccccaagcttgcttgagaggacaagcacatggtgcaggtggggtaggttgtccaaagaagatgcaaccttgaaagtgaaccttagtcttaccaaatt |
135 |
Q |
| |
|
|||||||||||||| | |||||||||| ||| ||||||||||| ||||||||| | || || |||||||| | ||||||||||| || ||||||| |
|
|
| T |
30942081 |
cttccccaagcttgtctaagaggacaagtacaaggtgcaggtggttctggttgtccataaaacatacaaccttgtacatgaaccttagtttttccaaatt |
30941982 |
T |
|
| Q |
136 |
gatcaaggtaacgaagaaaatcaagaacatggttgaagttacagtgtgatagtggaactagtgg |
199 |
Q |
| |
|
| || | ||||||||| ||||| | |||||||||| || || ||||| ||||||||| |||| |
|
|
| T |
30941981 |
ggtctaagtaacgaaggaaatccaaaacatggttgctattgcactgtgaaagtggaactggtgg |
30941918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 30864399 - 30864327
Alignment:
| Q |
19 |
cgatgagtgcatcaagacttccccaagcttgcttgagaggacaagcacatggtgcaggtggggtaggttgtcc |
91 |
Q |
| |
|
||||||| || |||||||||||||| |||||||| ||||||||||| || || | ||||||| |||||||||| |
|
|
| T |
30864399 |
cgatgagagcgtcaagacttccccacgcttgcttaagaggacaagcgcaaggagaaggtgggttaggttgtcc |
30864327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 38980685 - 38980627
Alignment:
| Q |
21 |
atgagtgcatcaagacttccccaagcttgcttgagaggacaagcacatggtgcaggtgg |
79 |
Q |
| |
|
|||||||||||||| |||||||| |||||| | |||||||| | ||||||||| ||||| |
|
|
| T |
38980685 |
atgagtgcatcaaggcttccccatgcttgcctcagaggacatggacatggtgctggtgg |
38980627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 47836652 - 47836599
Alignment:
| Q |
113 |
gtgaaccttagtcttaccaaattgatcaaggtaacgaagaaaatcaagaacatg |
166 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||| || ||||||||||| |
|
|
| T |
47836652 |
gtgaaccttagtcttcccaaattgatcaagatagtgaaggaattcaagaacatg |
47836599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 33672088 - 33672142
Alignment:
| Q |
26 |
tgcatcaagacttccccaagcttgcttgagaggacaagcacatggtgcaggtggg |
80 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
33672088 |
tgcatcaagacttccccaagcttgtcgtagaggacaaggacaaggtgcaggtggg |
33672142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University