View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12764_low_2 (Length: 377)
Name: NF12764_low_2
Description: NF12764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12764_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 42662889 - 42662692
Alignment:
| Q |
12 |
cgttcactgaatttacagaaaaatttatataaataaatttgtaaaagtaccacgaatcggtacgcaagtaccaattcgcggtttgcatcaaatcaaaaga |
111 |
Q |
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| T |
42662889 |
cgttcaatgaatttacagaaaaatttatataaacaaatttgtaaaagtac-------------gcaagtatcaattcgcggtttgcatcaaatcaaaaga |
42662803 |
T |
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| Q |
112 |
attatgtaactataattgctcatttcagcgggctacagagtagttttgatagagtggctttagaaagtgatagtcaatctacaatcaaccatcataacta |
211 |
Q |
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| T |
42662802 |
attatgtaactataattgctcatttcagcgggctatagagtagttttaatagagtggctttagaaagtgatagtcaatctacaatcaaccatcataacta |
42662703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 220 - 358
Target Start/End: Complemental strand, 42662662 - 42662524
Alignment:
| Q |
220 |
aatactatttcaagcaataaagaaacttattcaatgagtatacttagtcctgtttgcataaatcacaaagctttctagttgtttcatatgaatgtccctc |
319 |
Q |
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| T |
42662662 |
aatactatttcaaactataaagaaacttattcaatgagtatacttagtcctgtttgcataaatcacaaagctttctagttgtttcatatgaatgtccctc |
42662563 |
T |
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| Q |
320 |
atgctcataatattactctaactctgatcatagtgtaac |
358 |
Q |
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| T |
42662562 |
atgctcataatattactctaactccgatcatagtataac |
42662524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 16723872 - 16723802
Alignment:
| Q |
54 |
aaaagtaccacgaatcggtacgcaagtaccaattcgcggtttgcatcaaatcaaaagaattatgtaactat |
124 |
Q |
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| T |
16723872 |
aaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattatgtgactat |
16723802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 29849075 - 29849137
Alignment:
| Q |
54 |
aaaagtaccacgaatcggtacgcaagtaccaattcgcggtttgcatcaaatcaaaagaattat |
116 |
Q |
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| T |
29849075 |
aaaagtaccacgaactggtacgcaagtaccaattcgcagttcgcaacatgtcaagagaattat |
29849137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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