View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12764_low_3 (Length: 359)
Name: NF12764_low_3
Description: NF12764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12764_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 30466420 - 30466747
Alignment:
| Q |
13 |
gagaagaagaagtaaaatgtagttgcaaagtcaagtctaaaggcggagttttgagctatgactcaagggatttacgagtttatatagatgaaaattattt |
112 |
Q |
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| T |
30466420 |
gagaagaagaagtaaaatgtagttgcaaggtcaagtctaaaggcggagttttaagctatgactcaaggggtttgcgagtttatatagattaaaattattt |
30466519 |
T |
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| Q |
113 |
tgcaagtcgcaaactataagtcaatcattataattggacatcatccaattcaacattgcgtg-nnnnnnncatggaaataatttcccacagttcattnnn |
211 |
Q |
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| T |
30466520 |
tgcaagtcgc-aactataagtcaatcattataattggacattatccaatttaacattgcgtgaaaaaaaacatggaaataatttcccacagttcattaaa |
30466618 |
T |
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| Q |
212 |
nnnnnttcagacattattggtctgataggttatagctacaacatcgagtatatcctttcaaggcttcattttccacatgtattccccaaggaaattctcg |
311 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30466619 |
aaaaattcagacattattggtctcataggttatagctacaacatcgagtacatcctttcaaggcttcattttccacatgtattccccaaggaaattctcg |
30466718 |
T |
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| Q |
312 |
ttgagtgatttcaagatcccaattacacg |
340 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30466719 |
ttgagtgatttcaagatcccaattacacg |
30466747 |
T |
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