View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12764_low_5 (Length: 246)

Name: NF12764_low_5
Description: NF12764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12764_low_5
NF12764_low_5
[»] chr4 (1 HSPs)
chr4 (15-202)||(41206366-41206554)
[»] chr1 (1 HSPs)
chr1 (127-173)||(32623224-32623270)
[»] chr6 (1 HSPs)
chr6 (119-176)||(5466944-5467001)
[»] chr5 (2 HSPs)
chr5 (122-165)||(36975937-36975980)
chr5 (136-168)||(22599125-22599157)
[»] chr7 (1 HSPs)
chr7 (135-173)||(15019070-15019108)
[»] chr3 (1 HSPs)
chr3 (132-169)||(51188667-51188704)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 41206366 - 41206554
Alignment:
Q  15 gattcacgaattgccttgagaaacttgtg--tgtcacacactcacaagctgacgaatcatggtcattctcacgttggaaccacttgatgggactcattgt 112  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41206366 gattcacgaattgccttgagaaacttgtgtgtgtcacacactcacaagctgatgaatcatggtcattctcacgttggaaccacttgatgggactcattgt 41206465  T
Q  113 gtta-acgttccacatcgaatagataaaagtgtttgatatggtatttaagtcatgagattcttccctgaaaatattcactcaataaaccag 202  Q
    ||||  ||| ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||  ||| |||||| |||||||||||    
T  41206466 gttaggcgtcccatatcgagtagataaaagtgtttgatgtggtatttaagtcatgagattcttccct--aaaaattcacccaataaaccag 41206554  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 32623270 - 32623224
Alignment:
Q  127 tcgaatagataaaagtgtttgatatggtatttaagtcatgagattct 173  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||    
T  32623270 tcgaaaagataaaaatgtttgatatggtatttaagacatgagattct 32623224  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 5466944 - 5467001
Alignment:
Q  119 gttccacatcgaatagataaaagtgtttgatatggtatttaagtcatgagattcttcc 176  Q
    |||||||||||| ||||| |||||| ||||| ||||| ||||||||||||| ||||||    
T  5466944 gttccacatcgactagattaaagtgattgatgtggtaattaagtcatgagactcttcc 5467001  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 36975937 - 36975980
Alignment:
Q  122 ccacatcgaatagataaaagtgtttgatatggtatttaagtcat 165  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||    
T  36975937 ccacatcgagtagatcaaagtgtttgatgtggtatttaagtcat 36975980  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 22599157 - 22599125
Alignment:
Q  136 taaaagtgtttgatatggtatttaagtcatgag 168  Q
    |||||||||||||||||||| ||||||||||||    
T  22599157 taaaagtgtttgatatggtacttaagtcatgag 22599125  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 15019070 - 15019108
Alignment:
Q  135 ataaaagtgtttgatatggtatttaagtcatgagattct 173  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  15019070 ataaaagtgtttgatgtggtatttaagtcatgaggttct 15019108  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 51188667 - 51188704
Alignment:
Q  132 tagataaaagtgtttgatatggtatttaagtcatgaga 169  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  51188667 tagataaaagtctttaatatggtatttaagtcatgaga 51188704  T

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