View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_high_11 (Length: 423)
Name: NF12765_high_11
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 40392138 - 40392545
Alignment:
| Q |
1 |
ataatgatgcttactagttctgcttattaagcacaaaagatattttaatttatttgcatctacattgttgtctttgttcaatggcagcgtctaatgtcga |
100 |
Q |
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| T |
40392138 |
ataatgatgcttactagttctgcttattaagcacaaaagatattttaatttatttgcatctacattgttgtctttgttcaatggcagagtctaatgtcga |
40392237 |
T |
|
| Q |
101 |
tctcgatcacttcatacnnnnnnnn-gagcaatgatggtgtattgctagtaagcaggattttctacataactttttcagcatatgacttgaatcatctag |
199 |
Q |
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| T |
40392238 |
tctcgatcacttcatacaaaaaaaaagagcaatgattgtgtattgctagtaagcaggattttctacataactttttcagcatatgacttgaatcatctag |
40392337 |
T |
|
| Q |
200 |
agttatatcgaatcattggtattgttattacttgtttgagtttttagcattgttatgcagaagttcaatttctgggagaaattcaatttctcaccctaaa |
299 |
Q |
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| T |
40392338 |
agttatatcgaatcattggcattgttattacttgtttgagtttttagcattgttatgcagaagttcaatttctgggagaaattcaatttctcaccctaaa |
40392437 |
T |
|
| Q |
300 |
tttgagtttttagttatgcaggccaaacgggctagtccgaatgagtgacgggttattttaggcagggtaaaaataccgggcatctttgggacaaggcttg |
399 |
Q |
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| T |
40392438 |
tttgagtttttagttatgcaggccaaacgggctagtccgaatgagtgacgggttattttaggcagggcaaaaataccgggcatctttgggataaggcttg |
40392537 |
T |
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| Q |
400 |
gttcgatt |
407 |
Q |
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| T |
40392538 |
gtttgatt |
40392545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 40380818 - 40380939
Alignment:
| Q |
60 |
ctacattgttgtctttgttcaat-ggcagcgtctaatgtcgatctcgatcacttcatacnnnnnnnngagcaatgatggtgtattgctagtaagcaggat |
158 |
Q |
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| T |
40380818 |
ctacattgttgtctttgttcatttggcagattctaatgtcgatctcg----cttcatacgaaaaaaagaacaatgatggtgtattgctagcaagaaggat |
40380913 |
T |
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| Q |
159 |
tttctacataactttttcagcatatg |
184 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
40380914 |
tttctaaataactttttcagcatatg |
40380939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 41051998 - 41051927
Alignment:
| Q |
166 |
ataactttttcagcatatgacttgaatcatctagagttatatcgaatcattggtattgttattacttgtttg |
237 |
Q |
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| T |
41051998 |
ataattttttcagcatatgactttaatgatctcgagttctatcaaatcattggcgctgttattacttctttg |
41051927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 41052133 - 41052100
Alignment:
| Q |
47 |
aatttatttgcatctacattgttgtctttgttca |
80 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
41052133 |
aatttatttgcatatacattgttgtctttgttca |
41052100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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