View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_high_12 (Length: 416)
Name: NF12765_high_12
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 44974235 - 44974618
Alignment:
| Q |
19 |
cctaaaaccattgatattgctgctattgtttcttctcttttaaacgagcttagactcactcatttggctaatacaaggcttaatcatggtttatctggtg |
118 |
Q |
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| T |
44974235 |
cctaaaaccattgatattgctgctattgtttcttctcttttaaacgagcttagactcactcatttggctaatacaaggcttaatcatggtttatctggtg |
44974334 |
T |
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| Q |
119 |
gtgaacgtagaagggtctctattggacttagtcttcttcatgatcctgctgttttgctccttgatgaacctacttctggtcttgatagttcctctgcttt |
218 |
Q |
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| T |
44974335 |
gtgaacgtagaagggtctctattggacttagtcttcttcatgatcctgctgttttgctacttgatgaacctacttctggtcttgatagttcctctgcttt |
44974434 |
T |
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| Q |
219 |
caaagtcatgcaaactcttaaatcaacttgtgtttcatataacagaactattgttctttccattcaccaaccaagtttcaagattctctcttgtattgat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44974435 |
caaagtcatgcaaactcttaaatcaacttgtgtttcatataacagaactattgttctttccattcaccaaccaagtttcaagattctctcttgtattgat |
44974534 |
T |
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| Q |
319 |
agaatcttacttctttcaaaaggaactgttgttcatcatggaagcttagcttcacttcaatcattcttgctttcaaaagggttc |
402 |
Q |
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| T |
44974535 |
agaatcttacttctttcaaaaggaactgttgttcatcatggaagcttagcttcacttcaatcattcttgctttcaaaagggttc |
44974618 |
T |
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