View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_high_14 (Length: 338)
Name: NF12765_high_14
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 41344530 - 41344837
Alignment:
| Q |
14 |
ctgagaaaaaccctgcggtataaaaacgaaaagaaacaattcacacttatttattaattcatgtgcaagacccttcttgtaagcaaaagnnnnnnnnngt |
113 |
Q |
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| T |
41344530 |
ctgagaaaaaccctgcggtataaaaacgaaaagaaacaattcacacttatttattaattcatgtgcaagacccttcttgtaagcaaaagaaaaaaaa-gt |
41344628 |
T |
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| Q |
114 |
aaattaattacctgtatgaaagcacaggaacgatgataagtggagggacaatttgtgcagttaataaattccccttcatcttctccttttccacaaacga |
213 |
Q |
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| T |
41344629 |
aaattaattacctgtatgaaagcacaggaacgatgataagtggagggacaatttgtgcagttaataaattccccttcatcttctccctttccacaaacta |
41344728 |
T |
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| Q |
214 |
aacaaacaatgtcatgtatgggagcatacatgaacatgtctcgacgtttttgttcatcctctttcaaccacttactaatcaggatgttttggaggacgga |
313 |
Q |
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| T |
41344729 |
aacaaacaatgtcatgtatgggagcatacatgaacatgtctcgacgtttttgttcatcctctttcaaccacttactaatcaggatgttttggaggacgga |
41344828 |
T |
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| Q |
314 |
cttccgtgt |
322 |
Q |
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| T |
41344829 |
cttccgtgt |
41344837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 5743972 - 5743938
Alignment:
| Q |
192 |
tcttctccttttccacaaacgaaacaaacaatgtc |
226 |
Q |
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| T |
5743972 |
tcttctccttttccacaaactaaacaaacaatgtc |
5743938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 5780931 - 5780897
Alignment:
| Q |
192 |
tcttctccttttccacaaacgaaacaaacaatgtc |
226 |
Q |
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| T |
5780931 |
tcttctccttttccacaaactaaacaaacaatgtc |
5780897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 5751762 - 5751729
Alignment:
| Q |
193 |
cttctccttttccacaaacgaaacaaacaatgtc |
226 |
Q |
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| T |
5751762 |
cttctccttttccacaaactaaacaaacaatgtc |
5751729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 5788721 - 5788688
Alignment:
| Q |
193 |
cttctccttttccacaaacgaaacaaacaatgtc |
226 |
Q |
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| T |
5788721 |
cttctccttttccacaaactaaacaaacaatgtc |
5788688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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