View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12765_high_16 (Length: 321)
Name: NF12765_high_16
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 44788378 - 44788673
Alignment:
| Q |
16 |
cttacaacagccatacccttccctgctcgtagaactctagcatcgatctcaatctcctcctacaattacacaagtcatagggaatttttnnnnnnntaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44788378 |
cttacaacagccatacccttccctgctcgtagaactttagcatcgatctcaatctcctcctacaattacacaagtcatagggaatttttttaaaaataaa |
44788477 |
T |
|
| Q |
116 |
ctatctgtgatatattcatcacaattcacacagatccaatatagaaaacccggaaaagaatctcctattcctcaaattatgtatttgatatcacaaataa |
215 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44788478 |
ctaactgtgatatattcatcacaattcacacagatccaatataggaaaccaggaaaagaatctcctattcctcaaattatgtatttgatatcacaaataa |
44788577 |
T |
|
| Q |
216 |
aatcgatgttattgtcaaaagttgaaagtagcattaatgatttgctttctgttggttaatcagctatgactagttactttcagttatgtcagtgaa |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44788578 |
aatcgatgttattgtcaaaagttcaaagtagcattaatgatttgctttctgttggttaatcagctatgactagttactttcagttatgttagtgaa |
44788673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 44803869 - 44803931
Alignment:
| Q |
16 |
cttacaacagccatacccttccctgctcgtagaactctagcatcgatctcaatctcctcctac |
78 |
Q |
| |
|
||||||||||| | |||| ||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
44803869 |
cttacaacagctacggcctttcctactcgtagaaccctagcatcaatctcaatctcctcctac |
44803931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University