View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12765_high_2 (Length: 672)

Name: NF12765_high_2
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12765_high_2
NF12765_high_2
[»] chr1 (1 HSPs)
chr1 (9-653)||(5273727-5274374)


Alignment Details
Target: chr1 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 9 - 653
Target Start/End: Complemental strand, 5274374 - 5273727
Alignment:
Q  9 gaagcaaaggttaatgaacttgttagtacaacatacaccacaaagagacaaagaccgttctccacggttgctatgtcggttttaaaaatacttataagaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274374 gaagcaaaggttaatgaacttgttagtacaacatacaccacaaagagacaaagaccgttctccacggttgctatgtcggttttaaaaatacttataagaa 5274275  T
Q  109 tatttttcagattcatcccacgatgtat----acccaacctaattgtgacttcaaattttttattaacttaacacaattccttttaatttgtttattata 204  Q
    ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274274 tatttttcagattcatcccacgatgtatgtatacccaacctaattgtgacttcaaattttttattaacttaacacaattccttttaatttgtttattata 5274175  T
Q  205 tacatggagactcccacgttcgttgttcaaatttcataattaaacgcgcatgctaagctcgcactttttcttctaactcctaactatcactatcaccata 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274174 tacatggagactcccacgttcgttgttcaaatttcataattaaacgcgcatgctaagctcgcactttttcttctaactcctaactatcactatcaccata 5274075  T
Q  305 atttaataaaaaatatttataattaatctaactaatgatcatctctcaatcattagacttagactccctacctcttgtttcaattctaaataagtgtaat 404  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5274074 att-aatcaaaaatatttataattaatctaactaatgatcatctctcaatcattagacttagactccctacctcttgtttcaattctaaataagtgtaat 5273976  T
Q  405 taacaatgtttaaattaaaaccatattgaagaattatattattgtaaattatcatatcataaactttggtcccatatgagttgtcgtttgctttgtatat 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273975 taacaatgtttaaattaaaaccatattgaagaattatattattgtaaattatcatatcataaactttggtcccatatgagttgtcgtttgctttgtatat 5273876  T
Q  505 ggtcactcagtggacttccctaagttttagttacatagaactaggacaaatccattacaataattacaattttaatatttctatttacatattaagtcaa 604  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273875 ggccactcagtggacttccctaagttttagttacatagaactaggacaaatccattacaataattacaattttaatatttctatttacatattaagtcaa 5273776  T
Q  605 tgcttatactactaacatttttcttgtgattgagtataaatatgtccac 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5273775 tgcttatactactaacatttttcttgtgattgagtataaatatgtccac 5273727  T

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