View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12765_high_23 (Length: 234)
Name: NF12765_high_23
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 52164490 - 52164701
Alignment:
| Q |
1 |
atggaatttgaggtaggggaaggaggttatgattgcggcgcgtagattgaacgcgtttgatgaacaaacgaagtggaagaatatgttttgtggacatgat |
100 |
Q |
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| T |
52164490 |
atggaatttgaggtaggggaaggaggttatgattgcggcgcgtagattgaacgcgtttgatgaacaaacgaagtggaagaatatgttttgtggacatgat |
52164589 |
T |
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| Q |
101 |
gaatgttggaggattgataagattgcagccatggatcctcggatatatgttgtgtcgagtgtcattgctacttggactactgttgattttgaagtgtcgg |
200 |
Q |
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| T |
52164590 |
gaatgttggaggattgataagattgctgccatggatcctcggatatatgttgtgtcgagtgtcattgctacttggactactgttgattttgaagtgtcgg |
52164689 |
T |
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| Q |
201 |
taatggaagggc |
212 |
Q |
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|||||||||||| |
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| T |
52164690 |
taatggaagggc |
52164701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 6635652 - 6635775
Alignment:
| Q |
55 |
gtttgatgaacaaacgaagtggaagaatatgttttgtggacatgatgaatgttggaggattgataagattgcagccatggatcctcggatatatgttgtg |
154 |
Q |
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|||||| |||||||| ||||| |||| |||||||||||||||||||| |||||||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
6635652 |
gtttgaggaacaaacaaagtgaaagatgatgttttgtggacatgatgagtgttggaggacagagaggattgcagccatggatcctcggatatatgttgtg |
6635751 |
T |
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| Q |
155 |
tcgagtgtcattgctacttggact |
178 |
Q |
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| T |
6635752 |
tctaatgtcattgccacatggact |
6635775 |
T |
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