View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12765_high_4 (Length: 528)
Name: NF12765_high_4
Description: NF12765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12765_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 46870280 - 46870430
Alignment:
| Q |
11 |
gagagatgaagtaatgagtggaggtaaaaagcaatgggatatggatgaagctgtgaaagctcacatgtcattttgcagaaaattcaaatctaaccctgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46870280 |
gagagatgaagtaatgagtggaggtaaaaagcaatgggatatggatgaagctgtgaaagctcacatgtcattttgcagaaaattcaaatctaaccctgca |
46870379 |
T |
|
| Q |
111 |
gttagagtagcagaaggtatgagacagatgctaagaagaagatcaaatgat |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46870380 |
gttagagtagcagaaggtatgagacagatgctaagaagaagatcaaatgat |
46870430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 195 - 339
Target Start/End: Original strand, 46870464 - 46870608
Alignment:
| Q |
195 |
aagaagtattcaaggtcaccaaccacttctcaagttggagattcttccactttttctttgtattgatgatgagaaaccaagaagcagagtatactctgtt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46870464 |
aagaagtattcaaggtcaccaaccacttctcaagttggagattcttccactttttctttgtattgatgatgagaaaccaagaagcagagtatactctgtt |
46870563 |
T |
|
| Q |
295 |
tgaggcagaggatactctgttttggttagaataaaaagttaattg |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46870564 |
tgaggcagaggatactctgttttggttagaataaaaagttaattg |
46870608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 453 - 509
Target Start/End: Original strand, 46870722 - 46870778
Alignment:
| Q |
453 |
accaactgattcctaatccctttgtcatcttttgtgttagaatactgttaacttatt |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46870722 |
accaactgattcctaatccctttgtcatcttttgtgttagaatactgttaacttatt |
46870778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University